Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq204124 127 2e-24 >seq204124 Length=22413 Score = 127 bits (140), Expect = 2e-24 Identities = 280/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Minus Query 16223 CCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTC 16282 |||||||| | |||||| | ||||||||||| || | |||||||| || || ||| Sbjct 6672 CCTTCGTCCCGGCTGATCAACTCGTTGGAAAAGGTAAGACCTGGCATCAAACCACGCTTC 6613 Query 16283 TTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAA 16342 || | |||||| || | ||||| || || |||||||| || |||||||||| || ||| Sbjct 6612 TTCATCCAGAAAATAGACGCAAAAGATCCGGAAAAGAAGATGCCCTCAACAGCGGCGAAA 6553 Query 16343 GCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCG 16402 |||| | ||||| || | || | ||||| | ||||| || || |||| ||| Sbjct 6552 GCGACGAGACGTTCTCCGAATGTCGAGTCTTTGTCGGATATCCAATTGAGTGCCCAGTCG 6493 Query 16403 GCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTC--CT 16460 || || |||| || || || || || | || | ||| | | ||| ||| || Sbjct 6492 GCCTTGCGTTTGATGCATGGGATGGTCTCGACAGCGTCAAAGAGGTACTCGCGTTCGGCT 6433 Query 16461 GAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTA 16520 | || | || |||||||| || || | ||| | || || || ||||| || | Sbjct 6432 G--GGTCCTTGATGTACGTATCGATGAGGAGCGAGTATGTCTCCGAATGGATGTTTTCCA 6375 Query 16521 TGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATC 16580 | || || || |||||||| || || ||||| || ||| ||||| | || | Sbjct 6374 TCATGATTTGGAAGCCATAGAAACACCGTGCCTCGGCAGCTTGAACTTCGTTTGAGAAGC 6315 Query 16581 GTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTG 16638 | || |||| ||||| || || || |||||| || || ||||| || || | ||| Sbjct 6314 GCTCGACCAGATTCTCGTTGACAATCCCGTCAGAAGCGGCGAAAAAGGCTAAAACGTG 6257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510107045798560