Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq204124 156 5e-33 seq201019 143 3e-29 >seq204124 Length=22413 Score = 156 bits (172), Expect = 5e-33 Identities = 375/562 (67%), Gaps = 8/562 (1%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 || ||| || ||||| ||| | || ||||| | || || || ||||||||||| || Sbjct 6697 CAGACAAGCAAAATCCGTGTGCATGCCTTCGTCCCGGCTGATCAACTCGTTGGAAAAGGT 6638 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 || || ||||| | |||||||| || | ||| || || |||||||| ||||| ||||| Sbjct 6637 AAGACCTGGCATCAAACCACGCTTCTTCATCCAGAAAATAGACGCAAAAGATCCGGAAAA 6578 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC--ATAAC-CGGCGCTGTC 24307 ||| || || || || || || || || | || | |||||| || | | | |||| Sbjct 6577 GAAGATGCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCGAATGTCGAGTCTTTGTC 6518 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 |||||| || | ||||| |||||||| ||| | || || || ||||| | ||| Sbjct 6517 GGATATCCAATTGAGTGCCCAGTCGGCCTTGCGTTTGATGCATGGGATGGTCTCGACAGC 6458 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 | |||||| || | ||| || || | || ||||| || | || || Sbjct 6457 GTCAAAGAGGTACTCGCGTTCGGCTGGGTCCTTGATGTACGTATCGATGAGGAGCGAGTA 6398 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 | |||||||| |||||||| || ||||| || || |||||||| | ||||||| Sbjct 6397 TGTCTCCGAATGGATGTTTTCCATCATGATTTGGAAGCCATAGAAACACCGTGCCTCGGC 6338 Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 | || ||||| | | || || || | | ||| || || || || |||||| || Sbjct 6337 AGCTTGAACTTCGTTTGAGAAGCGCTCGACCAGATTCTCGTTGACAATCCCGTCAGAAGC 6278 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTAT--- 24603 || ||||| || || || || ||||| | ||||| || ||| ||||| | Sbjct 6277 GGCGAAAAAGGCTAAAACGTGAGAAATAAAGTGGCGTTCGT-TGTCGTTGAGTTTGTTTG 6219 Query 24604 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 24663 |||| || | | || || || | |||| ||| || | |||||||| || || || | Sbjct 6218 TCCAGTCGTGAAGGTCCTTCGACAAGTCCATTTCCTCTGCAGTCCAAAACGAAGCTTCAG 6159 Query 24664 CCTTTTTATACATATTCCAGAT 24685 | || |||||||| | ||| || Sbjct 6158 CTTTCTTATACATCTGCCATAT 6137 >seq201019 Length=96896 Score = 143 bits (158), Expect = 3e-29 Identities = 370/559 (66%), Gaps = 10/559 (2%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||| ||| | ||||| || | || || | || ||||| || || || Sbjct 29491 CAAGCAAAGTCGGTGTGCATCCCCTCATCGCGGCTGATGAGCTCATTGGAGAAAGTAAGG 29432 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| ||||| |||||||| | |||||| ||||||||||| || || || |||||| Sbjct 29431 CCGGGCATCAGGCCTCGCTTTTTCATCCAAAAGATGGACGCAAACGAGCCCGAGAAGAAA 29372 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGC---TGTCATGT 24311 || ||||| || || ||||| || | || | ||| || || || || |||| | Sbjct 29371 ATCCCTTCAACAGCGGCAAACGCGACCAGACGCTCTGCAAAAGTGGAGCTTTTGTCGGAT 29312 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 |||||||| ||||| || |||||| ||| | ||| || || || || | |||| | Sbjct 29311 ATCCACTTCAAGGCCCAGTCTGCCTTCCGTTTGATACAGGGAATGGTTTCAACGGCATCA 29252 Query 24372 AAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCAATCAAAAGACTATACA 24429 || ||||| || | ||| ||||| | || || || || | || || Sbjct 29251 AAAAGATA--TTCGCGCTCCACTGGGTCTTTGATGTAGGTGTCGATGAGGAGGGAGTATG 29194 Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 24489 | || ||||| || ||||| || || || || || ||||| || | ||||||| | Sbjct 29193 TCTCGGAATGGATATTTTCCATCATGATCTGGAAGCCATAGAAGCACCGGGCCTCGGCAG 29134 Query 24490 TCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 || ||||| || | || |||||| | || || || || ||||| ||||| || | Sbjct 29133 CTTGAACTTCATTAGAGAAACGTTCTACCAAGTTCTCGTTGACTATGCCGTCGGACGCCG 29074 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGTGTTA--GTTTATTCC 24606 |||| || || | || || || |||| ||| | | || | | | || |||| Sbjct 29073 CAAAGAAGGCGAGAACGTGGGAGATGAAATGCCGCTCGTTGTCGTTTAAACGATTGTTCC 29014 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | || | | || || || | |||| || || | ||||| || || ||||| || | Sbjct 29013 AGTCGTGAAGGTCCTTTGAAAGGTCCATCTCCTCGGCGGTCCAGAACGAAGCCTCCGCTT 28954 Query 24667 TTTTATACATATTCCAGAT 24685 | || ||||| | ||| || Sbjct 28953 TCTTGTACATTTGCCATAT 28935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592203839787840