Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq201019 289 3e-73 seq204124 250 3e-61 seq204495 114 1e-20 >seq201019 Length=96896 Score = 289 bits (320), Expect = 3e-73 Identities = 409/572 (72%), Gaps = 11/572 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || || ||||| ||||||||||||| ||||||| ||||||| Sbjct 28935 ATATGGCAAATGTACAAGAAAGCGGAGGCTTCGTTCTGGACCGCCGAGGAGATGGACCTT 28994 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 || |||||| ||||||| | || || |||||||||||||| ||||||||| Sbjct 28995 TCAAAGGACCTTCACGACTGGAACAATCGTTTAAACGACAACGAGCGGCATTTCATCTCC 29054 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || ||||| || || || ||||||||| ||||||||||| |||| || ||| Sbjct 29055 CACGTTCTCGCCTTCTTTGCGGCGTCCGACGGCATAGTCAACGAGAACTTGGTAGAACGT 29114 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| || | || || || | |||||||| ||||||||||| ||||| |||||| ||| Sbjct 29115 TTCTCTAATGAAGTTCAAGCTGCCGAGGCCCGGTGCTTCTATGGCTTCCAGATCATGATG 29174 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCG 116929 || || | || || || | || || |||||||||||| ||| | | | | Sbjct 29175 GAAAATATCCATTCCGAGACATACTCCCTCCTCATCGACACCTACATCAAAGACCCAGTG 29234 Query 116930 GAG-GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 ||| | ||| || |||| | ||| | || || || || || ||||| |||||| Sbjct 29235 GAGCGCGAATATCTTTTTG----ATGCCGTTGAAACCATTCCCTGTATCAAACGGAAGGC 29290 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 || ||||| || ||||| ||| || | || | || | ||||| ||||| || Sbjct 29291 AGACTGGGCCTTGAAGTGGATATCCGACAAAAGCTCCACTTTTGCAGAGCGTCTGGTCGC 29350 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 || || || || || || | ||||| |||||| || || |||| |||||| | || Sbjct 29351 GTTTGCCGCTGTTGAAGGGATTTTCTTCTCGGGCTCGTTTGCGTCCATCTTTTGGATGAA 29410 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 || || ||||| ||||||||||| |||||| ||| ||||||||| | | || ||||| Sbjct 29411 AAAGCGAGGCCTGATGCCCGGCCTTACTTTCTCCAATGAGCTCATCAGCCGCGATGAGGG 29470 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 |||| ||||||||| || | ||||||| Sbjct 29471 GATGCACACCGACTTTGCTTGCCTCCTGTTCA 29502 >seq204124 Length=22413 Score = 250 bits (276), Expect = 3e-61 Identities = 413/593 (70%), Gaps = 15/593 (3%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||| || || || || || ||||| ||||| | ||||| ||||| || Sbjct 6137 ATATGGCAGATGTATAAGAAAGCTGAAGCTTCGTTTTGGACTGCAGAGGAAATGGACTTG 6196 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 || |||||| ||||||| | | ||||||||||| ||||| || || Sbjct 6197 TCGAAGGACCTTCACGACTGGACAAACAAACTCAACGACAACGAACGCCACTTTATTTCT 6256 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| | |||||||||||||| ||||| || ||||||||||||||||||||||| Sbjct 6257 CACGTTTTAGCCTTTTTCGCCGCTTCTGACGGGATTGTCAACGAGAATCTGGTCGAGCGC 6316 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | | || || || | |||||||| ||||| ||||| ||||| || ||| ||| Sbjct 6317 TTCTCAAACGAAGTTCAAGCTGCCGAGGCACGGTGTTTCTATGGCTTCCAAATCATGATG 6376 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCG 116929 || ||| | || ||||| | || ||| ||||||||| |||||| | | | | | Sbjct 6377 GAAAACATCCATTCGGAGACATACTCGCTCCTCATCGATACGTACATCAAGGACCCAGCC 6436 Query 116930 GA---GGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAG 116986 || ||| | ||| |||| |||| ||||||| || || ||| ||||| ||| Sbjct 6437 GAACGCGAGTACCTC--TTTG----ACGCTGTCGAGACCATCCCATGCATCAAACGCAAG 6490 Query 116987 GCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTG 117046 ||||| ||||| || ||||| ||| || ||| | | ||||| || || || || Sbjct 6491 GCCGACTGGGCACTCAATTGGATATCCGACAAAGACTCGACATTCGGAGAACGTCTCGTC 6550 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 || ||||| || || |||||| |||||||||| || ||| || | || || ||| | Sbjct 6551 GCTTTCGCCGCTGTTGAGGGCATCTTCTTTTCCGGATCTTTTGCGTCTATTTTCTGGATG 6610 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| || || | ||||| || || || || ||||||| | ||| | ||||||| Sbjct 6611 AAGAAGCGTGGTTTGATGCCAGGTCTTACCTTTTCCAACGAGTTGATCAGCCGGGACGAA 6670 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACC 117219 || |||| || ||||| ||| |||| |||| || ||| || ||||| Sbjct 6671 GGCATGCACACGGATTTTGCTTGTCTGCTTTTCAGCCACTTGAAGCGTCGACC 6723 >seq204495 Length=136544 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || |||||||| || || |||||||| | || |||||| | || Sbjct 14900 ATGCAAATTTTCGTGAAGACGCTCACCGGGAAGACCATCACGTTGGAGGTCGAATCATCC 14841 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| | || | ||| || | ||||| || ||||| || | || || Sbjct 14840 GATACTATCGACAACG-TGAAAGCAAAGATCCAAGACAAGGAAGGCATTCCTCCCGATCA 14782 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || |||||||| || || |||| || || || ||||||||| Sbjct 14781 GCAACGCTTGATCTTTGCCGGCAAACAACTCGAGGACGGACGAACTCTTTCCGACTACAA 14722 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 14721 TATCCAGAAGGAGTCCACTCTTCACCTCGT 14692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513902119398080