Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq204124 122 8e-23 >seq204124 Length=22413 Score = 122 bits (134), Expect = 8e-23 Identities = 368/563 (65%), Gaps = 13/563 (2%) Strand=Plus/Minus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 |||||||||||| |||| |||||||||| || || |||||||| ||||| ||||| Sbjct 6694 ACAAGCAAAATCCGTGTGCATGCCTTCGTCCCGGCTGATCAACTCGTTGGAAAAGGTAAG 6635 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 ||||||||| | || || || || ||||| || |||| ||||| || || |||||||| Sbjct 6634 ACCTGGCATCAAACCACGCTTCTTCATCCAGAAAATAGACGCAAAAGATCCGGAAAAGAA 6575 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 || || ||||| ||||| || || || | || || ||| | | || | | || | || Sbjct 6574 GATGCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCGAATG-TCGAGTCTT--TGTC 6518 Query 16414 ---tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGC 16470 |||||| || ||||| | || || |||| | || ||| |||| | || Sbjct 6517 GGATATCCAATTGAGTGCCCAGTCGGCCTTGCGTTTGATGCATGGGATGGTCTCGACAGC 6458 Query 16471 ATTAAATAAATAAtttttttCTTTGCT--ATCTAAAATATAAGTATCTATTAGTAAACTA 16528 | ||| | || | ||| ||| || || || ||||| || || | Sbjct 6457 GTCAAAGAGGTACTCGCGTTC--GGCTGGGTCCTTGATGTACGTATCGATGAGGAGCGAG 6400 Query 16529 TACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCG 16588 || | || ||||| || || ||||| || || || ||||| || || | || ||| Sbjct 6399 TATGTCTCCGAATGGATGTTTTCCATCATGATTTGGAAGCCATAGAAACACCGTGCCTCG 6340 Query 16589 GATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTA 16648 | ||| ||||| | || | || | | || ||||| || || || || | Sbjct 6339 GCAGCTTGAACTTCGTTTGAGAAGCGCTCGACCAGATTCTCGTTGACAATCCCGTCAGAA 6280 Query 16649 GCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGT---TTT 16705 || || ||||| || | | ||| |||||| | |||||| || ||| ||| Sbjct 6279 GCGGCGAAAAAGGCTAAAACGTGAGAAATAAAGTGGCGTTCGTTGTCGTTGAGTTTGTTT 6220 Query 16706 AACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACA 16765 |||||| || || || || || || | || ||| |||||||||| ||||| || Sbjct 6219 GTCCAGTCGTGAAGGTCCTTCGACAAGTCCATTTCCTCTGCAGTCCAAAACGAAGCTTCA 6160 Query 16766 GCCTTTTTATACATTTTCCATAT 16788 || || |||||||| | |||||| Sbjct 6159 GCTTTCTTATACATCTGCCATAT 6137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461329657448800