Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq203715 127 4e-24 >seq203715 Length=28578 Score = 127 bits (140), Expect = 4e-24 Identities = 193/270 (71%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGG-CAAGATCGTGGAACGAAT 248891 |||||||| ||||| || ||||| || || ||||| | || | | ||||| Sbjct 22408 TTCAAAACCCTGGAACGTTCATATCTTCTTCGCATCGATGGTCGAG-TAGCCGAACGTCC 22466 Query 248892 TCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGAT--GACATAGAGAGCGTG 248949 |||||| ||| ||||||||||||||||||| || ||| |||| ||| |||| ||||| Sbjct 22467 TCAGCATATGATGATGCGAGTGGCTGTCGGTAT--ACACGGATCCGACCTAGAACGCGTG 22524 Query 248950 CTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTC 249009 | ||||| |||| | ||| ||||| | | || ||||| |||| || || ||| Sbjct 22525 GTTGAGACCTACAACCTCATGTCGGAACGGTTCTTCACTCATGCTTCACCAACCCTTTTC 22584 Query 249010 AACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGAC 249069 || ||||| || | | || ||||||||||||| ||| || |||| |||||||| Sbjct 22585 AATGCCGGAACACCCCATCCCCAAATGAGCTCGTGCTTCCTTGTTTGCATGAAAGACGAC 22644 Query 249070 TCTGTCGACGGCATTTATGACACGCTTAAA 249099 || | || || ||||| ||||| |||||| Sbjct 22645 TCGATAGAAGGAATTTACGACACTCTTAAA 22674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1070952854194944