Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq204124 138 1e-27 seq203715 89.7 6e-13 >seq204124 Length=22413 Score = 138 bits (152), Expect = 1e-27 Identities = 371/562 (66%), Gaps = 8/562 (1%) Strand=Plus/Minus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 || ||| || ||||| ||||| || ||||| | || || || ||||| ||||| || Sbjct 6697 CAGACAAGCAAAATCCGTGTGCATGCCTTCGTCCCGGCTGATCAACTCGTTGGAAAAGGT 6638 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 || || ||||| | |||||||| || | ||| || || || || || ||||||||||| Sbjct 6637 AAGACCTGGCATCAAACCACGCTTCTTCATCCAGAAAATAGACGCAAAAGATCCGGAAAA 6578 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCGCTGTC 33754 |||||| || || || || || || || | || | ||||| || | | | |||| Sbjct 6577 GAAGATGCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCGAATGTCGAGTCTTTGTC 6518 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 |||||| || | ||||| |||||||| ||| | || || || || || | || Sbjct 6517 GGATATCCAATTGAGTGCCCAGTCGGCCTTGCGTTTGATGCATGGGATGGTCTCGACAGC 6458 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 | |||||| || | ||| || || | || |||||||| | || || Sbjct 6457 GTCAAAGAGGTACTCGCGTTCGGCTGGGTCCTTGATGTACGTATCGATGAGGAGCGAGTA 6398 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 | |||||||| |||||||| || || || || || |||||||| | ||||||| Sbjct 6397 TGTCTCCGAATGGATGTTTTCCATCATGATTTGGAAGCCATAGAAACACCGTGCCTCGGC 6338 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 | || ||||| | | || || || | | ||| || || || || || ||| || Sbjct 6337 AGCTTGAACTTCGTTTGAGAAGCGCTCGACCAGATTCTCGTTGACAATCCCGTCAGAAGC 6278 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTAT--- 34050 || ||||| || || || || ||||| | ||||| || ||| ||||| | Sbjct 6277 GGCGAAAAAGGCTAAAACGTGAGAAATAAAGTGGCGTTCGT-TGTCGTTGAGTTTGTTTG 6219 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 |||| || | | || || || | |||| ||| || | |||||||| || || || | Sbjct 6218 TCCAGTCGTGAAGGTCCTTCGACAAGTCCATTTCCTCTGCAGTCCAAAACGAAGCTTCAG 6159 Query 34111 CCTTTTTATACATATTCCAGAT 34132 | || |||||||| | ||| || Sbjct 6158 CTTTCTTATACATCTGCCATAT 6137 >seq203715 Length=28578 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 63284 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATT 63343 ||||||||||||||| || ||| | || | | | | |||||| || || ||| Sbjct 23025 ATCAGGAATCCAAAGGGCATAAAACAAGTCACGAGCACGAGATTCCTCCTTGCCATGATT 22966 Query 63344 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63403 || ||||| | ||| | | || || | ||||||||||| | ||| || || | Sbjct 22965 TTTGCGCAGATCCAAGAAGTCAAAGATGTCGGCGTGCCACGGTTCGATGTAGATAGCAAA 22906 Query 63404 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63463 | | || || |||||||| || || ||||| | |||||| || ||| | ||| ||| Sbjct 22905 AGCACCCGGACGTTTGTTGCCACCTTGATCAACGTATCTTGCTGTGGCGTCATACGCTCG 22846 Query 63464 CAACATTGGAATAATACCGTTTGATATACCATTGGTACC 63502 |||||||||| || |||||||| ||||||||| || Sbjct 22845 TAACATTGGAACGATGCCGTTTGAGTAACCATTGGTTCC 22807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628207565778240