Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq204495 104 2e-17 seq201019 98.7 1e-15 seq204124 84.2 2e-11 >seq204495 Length=136544 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || | ||||| || ||||| || || || || || ||| Sbjct 14674 CCGCCACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCGGAA 14733 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| ||||| ||||| || ||| |||||| ||||||||||||||||| Sbjct 14734 AGAGTTCGTCCGTCCTCGAGTTGTTTGCCGGCAAAGATCAAGCGTTGCTGATCGGGAGGA 14793 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| ||| ||| | | || | || |||| | || ||| Sbjct 14794 ATGCCTTCCTTGTCTTGGATCTTTGCTTTCACGTTGTCGATAGTATCGGATGATTCGACC 14853 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| ||||| | ||| || ||||| |||||||| Sbjct 14854 TCCAACGTGATGGTCTTCCCGGTGAGCGTCTTCACGAAAATTTGCAT 14900 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| || || ||| |||| || || ||||||||||| || ||||| || ||| Sbjct 14518 TCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTG 14577 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | | ||| ||||| | ||| | Sbjct 14578 TCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGACGACTCTACCTCCAAGGTGATG 14637 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||||||| || || || || ||||| Sbjct 14638 GTCTTGCCTGTCAACGTCTTCACAAAAATCTGCAT 14672 >seq201019 Length=96896 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 52567 AAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAG---CCACTTTTGCCGAACGT 52623 |||| || ||||| ||||| ||||| | ||||||| |||||||||| || ||| Sbjct 29286 AAGGCAGACTGGGCCTTGAAGTGGAT---ATCCGACAAAAGCTCCACTTTTGCAGAGCGT 29342 Query 52624 CTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTT 52683 |||||||||||||| || ||||| | || || ||||| |||||| | || ||| Sbjct 29343 CTGGTCGCGTTTGCCGCTGTTGAAGGGATTTTCTTCTCGGGCTCGTTTGCGTCCATCTTT 29402 Query 52684 TACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGC 52743 | || |||| ||| | ||||||||||| || || ||| ||| | || ||| Sbjct 29403 TGGATGAAAAAGCGAGGCCTGATGCCCGGCCTTACTTTCTCCAATGAGCTCATCAGCCGC 29462 Query 52744 GACGAAGGAATGCACACAGATTTTGCGTG 52772 || || || |||||||| || ||||| || Sbjct 29463 GATGAGGGGATGCACACCGACTTTGCTTG 29491 Score = 86.0 bits (94), Expect = 6e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 52870 GACGCTTTACCCGTATCATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAG 52929 || |||||||| || || | |||||||| |||||| |||||||| | ||||| || Sbjct 29640 GATGCTTTACCAGTGAAGCTGATTGGCATGAATGCGACCTTGATGTGCCAATACATTGAA 29699 Query 52930 TTTGTTGCGGACAGACTGTTGATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAAC 52989 ||||| || ||| | || ||| || ||| || | || |||||| | ||| Sbjct 29700 TTTGTCGCAGACCGTCTTTTGGTGTCGCTTGGAAATGACAAGGTCTATAACTCAACGAAC 29759 Query 52990 CCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGT 53049 ||||| || ||| ||| || |||||| | |||||||| ||||||||||| | ||| Sbjct 29760 CCCTTCGACTTCATGGACATGATCTCGCTCCAAGGCAAAACGAACTTTTTCGAAAAACGC 29819 Query 53050 GT 53051 || Sbjct 29820 GT 29821 >seq204124 Length=22413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/170 (72%), Gaps = 8/170 (5%) Strand=Plus/Plus Query 52887 ATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACT 52946 |||| | ||||||||||||||| | |||||| | ||||| |||||||| || || | || Sbjct 6869 ATTGATTGGCATGAACGCGACCCTCATGTGCCAATACATTGAGTTTGTAGCTGATCGCCT 6928 Query 52947 GTTGATGCAGCTCGGTCAGC--CG--AAATACTATAATGCGCGTAACCCCTTTTCGTTTA 53002 | || | |||| | || || ||| |||||| || || || ||| |||| Sbjct 6929 GCTGGT----CTCGTTGGGCAACGATAAAGTGTATAATTCGACCAATCCGTTTGATTTTA 6984 Query 53003 TGAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTG 53052 || | | ||||||||| | ||||| || ||||||||||||| || ||| Sbjct 6985 TGGATATGATATCGCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGCGTG 7034 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 52567 AAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC---ACTTTTGCCGAACGT 52623 |||| || |||||| | || ||||| | |||||||| | || || | |||||| Sbjct 6488 AAGGCCGACTGGGCACTCAATTGGAT---ATCCGACAAAGACTCGACATTCGGAGAACGT 6544 Query 52624 CTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTT 52683 || ||||| || || || || || | || ||||| || ||||||| | || || Sbjct 6545 CTCGTCGCTTTCGCCGCTGTTGAGGGCATCTTCTTTTCCGGATCTTTTGCGTCTATTTTC 6604 Query 52684 TACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCG 52742 | || || || | ||| | ||||| || || || ||| |||||||||||| || Sbjct 6605 TGGATGAAGAAGCGTGGTT-TGATGCCAGGTCTTACCTTTTCCAACGAGTTGATCAGCCG 6663 Query 52743 CGACGAAGGAATGCACACAGATTTTGCGTGTTTG 52776 |||||||| |||||||| |||||||| ||| || Sbjct 6664 GGACGAAGGCATGCACACGGATTTTGCTTGTCTG 6697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494795886793600