Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq201019 183 4e-41 seq204124 152 7e-32 >seq201019 Length=96896 Score = 183 bits (202), Expect = 4e-41 Identities = 378/559 (68%), Gaps = 10/559 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||||| ||||| || | || || || || ||||| || || || Sbjct 29491 CAAGCAAAGTCGGTGTGCATCCCCTCATCGCGGCTGATGAGCTCATTGGAGAAAGTAAGG 29432 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| ||||| |||||||| | |||||| ||||||||||| || || || ||||| Sbjct 29431 CCGGGCATCAGGCCTCGCTTTTTCATCCAAAAGATGGACGCAAACGAGCCCGAGAAGAAA 29372 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGT 50136 || ||||| || |||||||| || || || | |||| || || ||| || |||| | Sbjct 29371 ATCCCTTCAACAGCGGCAAACGCGACCAGACGCTCTGCAAAAGTGGAGCTTTTGTCGGAT 29312 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||||| ||||| || |||||| ||| | ||| || || ||||| | ||||| | Sbjct 29311 ATCCACTTCAAGGCCCAGTCTGCCTTCCGTTTGATACAGGGAATGGTTTCAACGGCATCA 29252 Query 50197 AAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGATCAAAAGACTATACA 50254 || ||||| || | ||| ||||| | || || ||||| | || || Sbjct 29251 AAAAGATA--TTCGCGCTCCACTGGGTCTTTGATGTAGGTGTCGATGAGGAGGGAGTATG 29194 Query 50255 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 50314 | || ||||| || ||||| || ||||| || || ||||| || | ||||||| | Sbjct 29193 TCTCGGAATGGATATTTTCCATCATGATCTGGAAGCCATAGAAGCACCGGGCCTCGGCAG 29134 Query 50315 TCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 50374 || ||||| || | || ||||| | || || || || ||||| ||||| || | Sbjct 29133 CTTGAACTTCATTAGAGAAACGTTCTACCAAGTTCTCGTTGACTATGCCGTCGGACGCCG 29074 Query 50375 CAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCC 50431 |||| || || | || || || ||||| |||||| ||| | || |||| Sbjct 29073 CAAAGAAGGCGAGAACGTGGGAGATGAAATGCCGCTCGTTGTCGTTTAAACGATTGTTCC 29014 Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | || | | || || || | || | || || | ||||| || || ||||| || | Sbjct 29013 AGTCGTGAAGGTCCTTTGAAAGGTCCATCTCCTCGGCGGTCCAGAACGAAGCCTCCGCTT 28954 Query 50492 TTTTATACATATTCCAGAT 50510 | || ||||| | ||| || Sbjct 28953 TCTTGTACATTTGCCATAT 28935 >seq204124 Length=22413 Score = 152 bits (168), Expect = 7e-32 Identities = 372/561 (66%), Gaps = 6/561 (1%) Strand=Plus/Minus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 || ||| || ||||| ||||| || ||||| | || || | ||||||||||| || Sbjct 6697 CAGACAAGCAAAATCCGTGTGCATGCCTTCGTCCCGGCTGATCAACTCGTTGGAAAAGGT 6638 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAA 50075 || || ||||| | |||||||| || | ||| || || |||||||| || || ||||| Sbjct 6637 AAGACCTGGCATCAAACCACGCTTCTTCATCCAGAAAATAGACGCAAAAGATCCGGAAAA 6578 Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAAC-TGGCGCTGTC 50132 |||||| || || || ||||| || || || || | ||||| || | | | |||| Sbjct 6577 GAAGATGCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCGAATGTCGAGTCTTTGTC 6518 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 |||||| || | ||||| |||||||| ||| | || || || || || | || Sbjct 6517 GGATATCCAATTGAGTGCCCAGTCGGCCTTGCGTTTGATGCATGGGATGGTCTCGACAGC 6458 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 | |||||| || | ||| || || | || |||||||| | || || Sbjct 6457 GTCAAAGAGGTACTCGCGTTCGGCTGGGTCCTTGATGTACGTATCGATGAGGAGCGAGTA 6398 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 | |||||||| |||||||| || || || || || |||||||| | ||||||| Sbjct 6397 TGTCTCCGAATGGATGTTTTCCATCATGATTTGGAAGCCATAGAAACACCGTGCCTCGGC 6338 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | || ||||| | | || || || | | ||| || || || || |||||| || Sbjct 6337 AGCTTGAACTTCGTTTGAGAAGCGCTCGACCAGATTCTCGTTGACAATCCCGTCAGAAGC 6278 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT---T 50429 || ||||| || || || || ||||| || ||||||| | ||||| | | Sbjct 6277 GGCGAAAAAGGCTAAAACGTGAGAAATAAAGTGGCGTTCGTTGTCGTTGAGTTTGTTTGT 6218 Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489 ||| || | | || || || | || | ||| || | |||||||| || || || || Sbjct 6217 CCAGTCGTGAAGGTCCTTCGACAAGTCCATTTCCTCTGCAGTCCAAAACGAAGCTTCAGC 6158 Query 50490 CTTTTTATACATATTCCAGAT 50510 || |||||||| | ||| || Sbjct 6157 TTTCTTATACATCTGCCATAT 6137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716432653553120