Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq204124 132 5e-26 >seq204124 Length=22413 Score = 132 bits (146), Expect = 5e-26 Identities = 374/569 (66%), Gaps = 9/569 (2%) Strand=Plus/Minus Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922 |||| | ||| |||||||| || | ||| || || | || || | ||||| ||| Sbjct 6702 AAAAGCAGACAAGCAAAATCCGTGTGCATGCCTTCGTCCCGGCTGATCAACTCGTTGGAA 6643 Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCG 13982 || || | ||||||||||| || || || || | ||| || || | ||||| || ||| Sbjct 6642 AAGGTAAGACCTGGCATCAAACCACGCTTCTTCATCCAGAAAATAGACGCAAAAGATCCG 6583 Query 13983 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14042 |||||||| || |||||||| || || || || | | |||||||| || | | | | Sbjct 6582 GAAAAGAAGATGCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCGAATGTCGAGTCT 6523 Query 14043 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14102 |||| |||||||| || ||||| || | || ||| || | || || || Sbjct 6522 TTGTCGGATATCCAATTGAGTGCCCAGTCGGCCTTGCGTTTGATGCATGGGATGGTCTCG 6463 Query 14103 ATAGCATTAAATAAATATT--CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTA 14160 | ||| | ||| | || | | ||| | || |||| ||||| ||||| || || Sbjct 6462 ACAGCGTCAAAGAGGTACTCGCGTTCGGCTGGGTCCTTG--ATGTACGTATCGATGAG-G 6406 Query 14161 AGCTA-TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTA 14219 ||| | || | || || || ||||||||||| || || || ||||| || || | Sbjct 6405 AGCGAGTATGTCTCCGAATGGATGTTTTCCATCATGATTTGGAAGCCATAGAAACACCGT 6346 Query 14220 GCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14279 || || | ||| ||||| | || | ||| ||| ||| || || || || || Sbjct 6345 GCCTCGGCAGCTTGAACTTCGTTTGAGAAGCGCTCGACCAGATTCTCGTTGACAATCCCG 6286 Query 14280 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14339 ||| ||| || ||||| || || | || |||||||| | || | | ||||||| Sbjct 6285 TCAGAAGCGGCGAAAAAGGCTAAAACGTGAGAAATAAAGTGGCGTTCGTTGTCGTTGAGT 6226 Query 14340 ---TTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14396 ||| |||| ||| | ||||| || | || | ||| || | |||||||| | Sbjct 6225 TTGTTTGTCCAGTCGTGAAGGTCCTTCGACAAGTCCATTTCCTCTGCAGTCCAAAACGAA 6166 Query 14397 GCGACAGCTTTTTTATACATTACCCATAT 14425 || ||||||| |||||||| |||||| Sbjct 6165 GCTTCAGCTTTCTTATACATCTGCCATAT 6137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478501647327200