Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq204124 150 2e-31 >seq204124 Length=22413 Score = 150 bits (166), Expect = 2e-31 Identities = 374/562 (67%), Gaps = 8/562 (1%) Strand=Plus/Minus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 || ||| || ||||| ||||| || || || | || || || ||||||||||| || Sbjct 6697 CAGACAAGCAAAATCCGTGTGCATGCCTTCGTCCCGGCTGATCAACTCGTTGGAAAAGGT 6638 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAA 42180 || || ||||| | |||||||| || | ||| || ||||||||||| ||||| ||||| Sbjct 6637 AAGACCTGGCATCAAACCACGCTTCTTCATCCAGAAAATAGACGCAAAAGATCCGGAAAA 6578 Query 42181 GAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCACTGTC 42237 |||||| || || || || || || || | || | ||||| || | | | |||| Sbjct 6577 GAAGATGCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCGAATGTCGAGTCTTTGTC 6518 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 |||||| || | ||||| |||||||| ||| | || || || || || | || Sbjct 6517 GGATATCCAATTGAGTGCCCAGTCGGCCTTGCGTTTGATGCATGGGATGGTCTCGACAGC 6458 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 | |||||| || | ||| || || | || |||||||| | || || Sbjct 6457 GTCAAAGAGGTACTCGCGTTCGGCTGGGTCCTTGATGTACGTATCGATGAGGAGCGAGTA 6398 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 | || ||||| |||||||| || || || || || |||||||| | ||||||| Sbjct 6397 TGTCTCCGAATGGATGTTTTCCATCATGATTTGGAAGCCATAGAAACACCGTGCCTCGGC 6338 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 | | || ||||| | | || || || | | ||| ||||| || || |||||| || Sbjct 6337 AGCTTGAACTTCGTTTGAGAAGCGCTCGACCAGATTCTCGTTGACAATCCCGTCAGAAGC 6278 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CCG--GTGTTAATTTAT 42533 || ||||| || || || || ||||| | ||||| || | ||| ||| Sbjct 6277 GGCGAAAAAGGCTAAAACGTGAGAAATAAAGTGGCGTTCGTTGTCGTTGAGTTTGTTT-G 6219 Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 |||| || | | || || || | || | ||| ||| | |||||||| || ||||| | Sbjct 6218 TCCAGTCGTGAAGGTCCTTCGACAAGTCCATTTCCTCTGCAGTCCAAAACGAAGCTTCAG 6159 Query 42594 CCTTTTTATACATATTCCAGAT 42615 | || |||||||| | ||| || Sbjct 6158 CTTTCTTATACATCTGCCATAT 6137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669423533306080