Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq201019 134 2e-26 seq204124 113 7e-20 seq203715 102 1e-16 seq202667 86.0 9e-12 >seq201019 Length=96896 Score = 134 bits (148), Expect = 2e-26 Identities = 339/510 (66%), Gaps = 14/510 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| || || |||| || || ||||| | ||| ||| | || || Sbjct 28935 ATATGGCAAATGTACAAGAAAGCGGAGGCTTCGTTCTGGACCGCCGAGGAGATGGACCTT 28994 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || |||||||| |||| ||| | | |||||| | || | ||||| | || || || Sbjct 28995 TCAAAGGACCTTCACGACTGGAACAATCGTTTAAACGACAACGAGCGGCATTTCATCTCC 29054 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| || | ||||||||||| | ||||| || || |||||||| || || | ||| Sbjct 29055 CACGTTCTCGCCTTCTTTGCGGCGTCCGACGGCATAGTCAACGAGAACTTGGTAGAACGT 29114 Query 125199 TTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 |||||| | | |||| | | || |||| |||||| || || ||||| |||||||| Sbjct 29115 TTCTCTAATGAAGTTCAAGCTGCC-GAGGCCCGGTGCTTCTATGGCTTCCAGATCATGAT 29173 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC--- 125314 || || | || || || | ||||| || || |||| ||||| || || Sbjct 29174 GGAAAATATCCATTCCGAGACATACTCCCTCCTCATCGACACCTACATCAAAGACCCAGT 29233 Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTAT---ACGTAAAAA 125371 | | || || | || ||| | || | || || | || | ||| ||| || Sbjct 29234 GGAGCGCGAATA---TCTTTTTGATGCCGTTGAAACCATTCCCTGTATCAAACG---GAA 29287 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 ||| | |||| | |||||| ||| | | || | | || || | ||||| Sbjct 29288 GGCAGACTGGGCCTTGAAGTGGATATCCGACAAAAGCTCCACTTTTGCAGAGCGTCTGGT 29347 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491 || || ||||| || || || || ||||| ||||| |||||| ||||||||||| | Sbjct 29348 CGCGTTTGCCGCTGTTGAAGGGATTTTCTTCTCGGGCTCGTTTGCGTCCATCTTTTGGAT 29407 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 || ||||| || || |||||||| || || Sbjct 29408 GAAAAAGCGAGGCCTGATGCCCGGCCTTAC 29437 >seq204124 Length=22413 Score = 113 bits (124), Expect = 7e-20 Identities = 368/562 (65%), Gaps = 16/562 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | ||||| || || ||| | || || |||||||| | || || | || || Sbjct 6137 ATATGGCAGATGTATAAGAAAGCTGAAGCTTCGTTTTGGACTGCAGAGGAAATGGACTTG 6196 Query 125079 TCCAAGGACCTGTACGATTGGG-AGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 || |||||||| |||| ||| | || | || ||| || || | ||||| || Sbjct 6197 TCGAAGGACCTTCACGACTGGACAAACAAACTCAACGACAAC-GAACGCCACTTTATTTC 6255 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 ||| |||| ||||| || |||| || || || || |||||||| |||||| | || Sbjct 6256 TCACGTTTTAGCCTTTTTCGCCGCTTCTGACGGGATTGTCAACGAGAATCTGGTCGAGCG 6315 Query 125198 ATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 ||||| | || ||| | | || |||| ||| || || || ||||||||||||| Sbjct 6316 CTTCTCAAACGAAGTTCAAGCTGCC-GAGGCACGGTGTTTCTATGGCTTCCAAATCATGA 6374 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-G 125315 | || ||| | || ||||| | ||||| || || || | |||||| || || | Sbjct 6375 TGGAAAACATCCATTCGGAGACATACTCGCTCCTCATCGATACGTACATCAAGGACCCAG 6434 Query 125316 C--AACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTAT---ACGTAAAA 125370 | |||| | || |||||| |||| |||| || | || | || ||| | Sbjct 6435 CCGAACGCGAGTAC---CTCTTTGACGCTGTCGAGACCATCCCATGCATCAAACG---CA 6488 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 |||| | |||| | ||||| ||| | | || | | || || | || | Sbjct 6489 AGGCCGACTGGGCACTCAATTGGATATCCGACAAAGACTCGACATTCGGAGAACGTCTCG 6548 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || |||||||| || ||||||||||||||||| || ||||||| | || || ||| Sbjct 6549 TCGCTTTCGCCGCTGTTGAGGGCATCTTCTTTTCCGGATCTTTTGCGTCTATTTTCTGGA 6608 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 | |||||||| || | ||||| || || || |||||||| || || |||| Sbjct 6609 TGAAGAAGCGTGGTTTGATGCCAGGTCTTACCTTTTCCAACGAGTTGATCAGCCGGGACG 6668 Query 125551 AGGGCCTACACTGTGACTTTGC 125572 | ||| | ||| || ||||| Sbjct 6669 AAGGCATGCACACGGATTTTGC 6690 >seq203715 Length=28578 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 96862 CACGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAAC 96921 || |||||||| || || ||||| ||||| || || ||| | || ||||| | |||| Sbjct 22865 CAAGATACGTTGATCAAGGTGGCAACAAACGTCCGGGTGCTTTTGCTATCTACATCGAAC 22924 Query 96922 CTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGG 96981 | |||||||| ||| | |||||||| | || |||||||||| |||| || || Sbjct 22925 CGTGGCACGCCGACATCTTTGACTTCTTGGATCTGCGCAAAAATCATGGCAAGGAGGAAT 22984 Query 96982 CACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTT 97027 | || || | |||||||||||||| || ||| | || |||||||| Sbjct 22985 CTCGTGCTCGTGACTTGTTTTATGCCCTTTGGATTCCTGATTTGTT 23030 >seq202667 Length=5513 Score = 86.0 bits (94), Expect = 9e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 70059 GACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGT 70118 ||| |||||||||||| || || || ||||| || |||||| | |||| ||| | ||| Sbjct 3411 GACGAGAGGGCGATCTTGGTCCCGTATACGGCTTTCAGTGGCGACACTTCGGCGCGGAGT 3470 Query 70119 ATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAAT-CATT 70177 || ||| ||||| | || ||| |||||||| |||||||| ||| ||| | | |||| Sbjct 3471 ATAAAGATTGCGATGCGGATTATCGAGGTCAGGGCGTTGATCAGTTG-AGAGAGTGCATT 3529 Query 70178 GACACTCTCAAGACCAATCCAACAGATAGGAGGATC 70213 | ||||| ||||||| ||| |||||||| Sbjct 3530 CGGAAAATCAAGGAGGATCCAACGGATCGGAGGATC 3565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739164793314080