Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq204124 131 1e-25 >seq204124 Length=22413 Score = 131 bits (144), Expect = 1e-25 Identities = 378/573 (66%), Gaps = 8/573 (1%) Strand=Plus/Minus Query 13137 GCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGT 13196 ||| ||| | || ||| |||||||| ||||| ||||| || | || || | ||||| Sbjct 6706 GCTGAAA-AGCAGACAAGCAAAATCCGTGTGCATGCCTTCGTCCCGGCTGATCAACTCGT 6648 Query 13197 TTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACG 13256 | ||||| || ||||| ||||| | || || || || ||||| || |||| ||||| | Sbjct 6647 TGGAAAAGGTAAGACCTGGCATCAAACCACGCTTCTTCATCCAGAAAATAGACGCAAAAG 6588 Query 13257 AACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTAC 13316 | || ||||| || || || ||||| || || || || | | | ||| || | || | Sbjct 6587 ATCCGGAAAAGAAGATGCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCGAATGT-C 6529 Query 13317 TATTTTTACTCTC-TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATA 13375 | | || || |||||| || ||||||| || || |||| | ||| || Sbjct 6528 GAGTCTTTGTCGGATATCCAATTGAGTGCCCAGTCGGCCTTGCGTTTGATGCATGGGATG 6469 Query 13376 TTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATC 13435 | || | |||| ||| | || | ||| ||| || || ||||| || Sbjct 6468 GTCTCGACAGCGTCAAAGAGGTACTCGCGTTCGGCTGGGTCCTTGATGTACGTATCGATG 6409 Query 13436 AATAAGCTA-TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 | | || | || | || ||||| || ||||||||| |||||||| ||||| ||||| Sbjct 6408 AGGA-GCGAGTATGTCTCCGAATGGATGTTTTCCATCATGATTTGGAAGCCATAGAAACA 6350 Query 13495 TCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTAT 13554 | ||||| | | ||||||||| | || | || | | || ||||| || || Sbjct 6349 CCGTGCCTCGGCAGCTTGAACTTCGTTTGAGAAGCGCTCGACCAGATTCTCGTTGACAAT 6290 Query 13555 CCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC--T 13612 ||||||| ||| || ||||| || | | ||| |||||| | |||||| || | Sbjct 6289 CCCGTCAGAAGCGGCGAAAAAGGCTAAAACGTGAGAAATAAAGTGGCGTTCGTTGTCGTT 6230 Query 13613 GACAAC-TTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671 || ||| ||| || ||| || || || || || | ||||| | |||||||| Sbjct 6229 GAGTTTGTTTGTCCAGTCGTGAAGGTCCTTCGACAAGTCCATTTCCTCTGCAGTCCAAAA 6170 Query 13672 AGAAGCAACAGCCTTCTTATACATCATCCATAT 13704 ||||| |||| |||||||||||| |||||| Sbjct 6169 CGAAGCTTCAGCTTTCTTATACATCTGCCATAT 6137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429908201688216