Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq203394 116 2e-21 seq10572 107 1e-18 seq117713 102 5e-17 seq29294 87.8 1e-12 seq23227 87.8 1e-12 seq188896 86.0 4e-12 seq188895 86.0 4e-12 seq126732 86.0 4e-12 seq55249 86.0 4e-12 seq154754 84.2 1e-11 seq173092 82.4 5e-11 seq49058 82.4 5e-11 seq39652 82.4 5e-11 seq38849 82.4 5e-11 >seq203394 Length=5880 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2898 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 2957 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 2958 GGTTATATTTAGCCTTA 2974 >seq10572 Length=269 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 130 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTGCGCTATCGGACTCGT 189 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 190 GTCTGTATTTAGCCTTA 206 >seq117713 Length=79 Score = 102 bits (112), Expect = 5e-17 Identities = 70/79 (89%), Gaps = 5/79 (6%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||||||||||||||||||||||||||| ||||||||||| | |||||||||| Sbjct 79 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGAAAGTAGATAGGGACAGAGAGAATCTCGTTA 20 Query 25959 ATCCTTTCATGCGCGTCAC 25977 |||| |||||||||||||| Sbjct 19 ATCCATTCATGCGCGTCAC 1 >seq29294 Length=61 Score = 87.8 bits (96), Expect = 1e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 19956 CAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATT 20015 |||||||||||||| ||||||||||||||| |||||||||||||||||| || |||||| Sbjct 61 CAAAGTTCTTTTCATCTTTCCCTCACGGTATTTGTTCGCTATCGGTCTCTCGCCAATATT 2 Query 20016 T 20016 | Sbjct 1 T 1 >seq23227 Length=61 Score = 87.8 bits (96), Expect = 1e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004 |||||| | |||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 58 CTCTCTTTCCAAAGTTCTTTTCATCTTGCCCTCACGGTACTTGTTCGCTATCGGTCTC 1 >seq188896 Length=61 Score = 86.0 bits (94), Expect = 4e-12 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||||| | |||||||||||||| ||||||| |||||||||||||||||||||||||| || Sbjct 61 TCTCTTTCCAAAGTTCTTTTCATCTTTCCCACACGGTACTTGTTCGCTATCGGTCTCTCG 2 >seq188895 Length=61 Score = 86.0 bits (94), Expect = 4e-12 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||||| | |||||||||||||| ||||||| |||||||||||||||||||||||||| || Sbjct 61 TCTCTTTCCAAAGTTCTTTTCATCTTTCCCGCACGGTACTTGTTCGCTATCGGTCTCTCG 2 >seq126732 Length=61 Score = 86.0 bits (94), Expect = 4e-12 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 19956 CAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATT 20015 |||||||||||||| |||||||||||||| ||||||||||||||||||| || |||||| Sbjct 60 CAAAGTTCTTTTCATCTTTCCCTCACGGTCCTTGTTCGCTATCGGTCTCTCGCCAATATT 1 >seq55249 Length=61 Score = 86.0 bits (94), Expect = 4e-12 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||||| | |||||||||||||| ||||||| |||||||||||||||||||||||||| || Sbjct 61 TCTCTTTCCAAAGTTCTTTTCATCTTTCCCCCACGGTACTTGTTCGCTATCGGTCTCTCG 2 >seq154754 Length=61 Score = 84.2 bits (92), Expect = 1e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 19962 TCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGCCT 20021 |||||||| ||||||||||||||||||||| |||||||||||| || |||||||||| | Sbjct 1 TCTTTTCATCTTTCCCTCACGGTACTTGTTAGCTATCGGTCTCTCGCCAATATTTAGCTT 60 Query 20022 T 20022 | Sbjct 61 T 61 >seq173092 Length=61 Score = 82.4 bits (90), Expect = 5e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 19950 TCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||| | |||||||||||||| ||||||||| |||||||||||||||||||||||| || Sbjct 61 TCTTTCCAAAGTTCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTCG 4 >seq49058 Length=61 Score = 82.4 bits (90), Expect = 5e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 19956 CAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATA 20013 |||||||||||||| |||||||||||| ||||||||||||||||||||| || |||| Sbjct 58 CAAAGTTCTTTTCATCTTTCCCTCACGTTACTTGTTCGCTATCGGTCTCTCGCCAATA 1 >seq39652 Length=61 Score = 82.4 bits (90), Expect = 5e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 19950 TCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||| | |||||||||||||| ||||||||| |||||||||||||||||||||||| || Sbjct 61 TCTTTCCAAAGTTCTTTTCATCTTTCCCTCTCGGTACTTGTTCGCTATCGGTCTCTCG 4 >seq38849 Length=61 Score = 82.4 bits (90), Expect = 5e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 19950 TCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||| | |||||||||||||| ||||||||| |||||||||||||||||||||||| || Sbjct 1 TCTTTCCAAAGTTCTTTTCATCTTTCCCTCCCGGTACTTGTTCGCTATCGGTCTCTCG 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334112363782148