Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq204495 113 4e-20 >seq204495 Length=136544 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | ||||| || || |||| | || || ||| | || Sbjct 14900 ATGCAAATTTTCGTGAAGACGCTCACCGGGAAGACCATCACGTTGGAGGTCGAATCATCC 14841 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | | ||| ||| || ||||||||||| || ||||| |||||||| Sbjct 14840 GATACTATCGACAACGTGAAAGCAAAGATCCAAGACAAGGAAGGCATTCCTCCCGATCAG 14781 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || |||||||||||||| | ||||| || || | ||||| ||||| Sbjct 14780 CAACGCTTGATCTTTGCCGGCAAACAACTCGAGGACGGACGAACTCTTTCCGACTACAAT 14721 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 14720 ATCCAGAAGGAGTCCAC 14704 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383 || || |||||||||||||||||||| || |||||||| || | || ||| ||||| Sbjct 15023 ATCCCTCCCGATCAACAACGTCTTATTTTCGCCGGCAAGCAACTCGAAGATGGACGCACG 14964 Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGA 22443 |||| || || ||||||||||| || |||||| | ||| | || |||| | || ||| Sbjct 14963 CTCTCGGACTATAACATTCAAAAGGAGTCCACCCTTCATCTTGTCCTGCGTCTCCGTGGA 14904 Query 22444 GG 22445 || Sbjct 14903 GG 14902 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| |||||||| || || || || || || || |||| | || || || | | Sbjct 14673 GATGCAGATTTTTGTGAAGACGTTGACAGGCAAGACCATCACCTTGGAGGTAGAGTCGTC 14614 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | ||| | | || || || || ||||||||||| ||||| |||||||| Sbjct 14613 GGACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCA 14554 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGA 22373 || || ||||| ||||||||||| ||| | ||||| Sbjct 14553 GCAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGA 14518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418681852619020