Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq201019 203 6e-47 seq204124 161 2e-34 >seq201019 Length=96896 Score = 203 bits (224), Expect = 6e-47 Identities = 443/654 (68%), Gaps = 26/654 (4%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||||| ||| || || |||||||||||||||||| ||||| | |||||| Sbjct 28944 ATGTACAAGAAAGCGGAGGCTTCGTTCTGGACCGCCGAGGAGATGGACCTTTCAAAGGAC 29003 Query 42369 ACGGCCGGCTGGGAGTCACT-GTCT----GAGAACGAAAAGTTTTTCCTCAAAAACATAC 42423 || |||| | || | || | || ||||| | |||| || || | | Sbjct 29004 CTTCACGACTGGAA--CAATCGTTTAAACGACAACGAGCGGCATTTCATCTCCCACGTTC 29061 Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 | |||||||| || || || |||||||||||||| |||||| ||| | ||| | Sbjct 29062 TCGCCTTCTTTGCGGCGTCCGACGGCATAGTCAACGAGAACTTGGTAGAACGTTTCTCTA 29121 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 | || || || ||||| || |||||||| ||||||||||| || || || Sbjct 29122 ATGAAGTTCAAGCTGCCGAGGCCCGGTGCTTCTATGGCTTCCAGATCATGATGGAAAATA 29181 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 | || || ||| ||| || || || |||| |||||| || || || ||||| Sbjct 29182 TCCATTCCGAGACATACTCCCTCCTCATCGACACCTACATCAAAGACCCAGTGGAGCGCG 29241 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGC 42663 | || || | ||| | || || || ||||| ||||| |||||| |||||||| Sbjct 29242 AATATCTTTTTGATGCCGTTGAAACCATTCCCTGTATCAAACGGAAGGCAGACTGGGCCT 29301 Query 42664 TCAACTGGAT---CGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | || ||||| ||| | | | || || | ||| | ||||| || ||| ||| Sbjct 29302 TGAAGTGGATATCCGACAAAAGCTCC---ACTTTTGCAGAGCGTCTGGTCGCGTTTGCCG 29358 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAG 42779 | || || || || |||||||||||| | || || |||||||| ||| | || || || Sbjct 29359 CTGTTGAAGGGATTTTCTTCTCGGGCTCGTTTGCGTCCATCTTTTGGATGAAAAAGCGAG 29418 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 | | ||||||||| || || ||||| || || ||||||||| | || |||||| |||| Sbjct 29419 GCCT-GATGCCCGGCCTTACTTTCTCCAATGAGCTCATCAGCCGCGATGAGGGGATGCAC 29477 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC----ACAAGCCCTCGAAGGA 42895 | |||||||| |||||||||||| ||||| |||| | || | || ||| | Sbjct 29478 ACCGACTTTGCTTGCCTCCTGTTC---AGCCATCTCAAACGTCGACCACACCCCGA--TA 29532 Query 42896 GCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 | ||||| |||| || || | || || | ||||||| | |||||||| || Sbjct 29533 CC--GTCCGAACCATAATTACTCAAGCTGTCGCGATCGAGCAAGAGTTCCTTAC 29584 >seq204124 Length=22413 Score = 161 bits (178), Expect = 2e-34 Identities = 356/532 (67%), Gaps = 19/532 (4%) Strand=Plus/Plus Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 ||||| |||||||| |||||||| || ||||| ||||| |||| | | ||| || Sbjct 6266 GCCTTTTTCGCCGCTTCTGACGGGATTGTCAACGAGAATCTGGTCGAGCGCTTCTCAAAC 6325 Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 || || || ||||| || || ||||| |||||||| || || || ||| | Sbjct 6326 GAAGTTCAAGCTGCCGAGGCACGGTGTTTCTATGGCTTCCAAATCATGATGGAAAACATC 6385 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAAC 42605 || || ||| ||| | || || | ||||||||| ||| || | ||| || | Sbjct 6386 CATTCGGAGACATACTCGCTCCTCATCGATACGTACATCAAGGACCCAGCCGAACGCGAG 6445 Query 42606 GGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTC 42665 || || | || | ||||| || || |||||||| ||||| |||||||| ||| Sbjct 6446 TACCTCTTTGACGCTGTCGAGACCATCCCATGCATCAAACGCAAGGCCGACTGGGCACTC 6505 Query 42666 AACTGGAT---CGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 || ||||| ||| | ||| | || ||||| || | || || || || |||| Sbjct 6506 AATTGGATATCCGACAAA---GACTCGACATTCGGAGAACGTCTCGTCGCTTTCGCCGCT 6562 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 || |||||||||||||| || || | || || || || |||||| | ||| || | Sbjct 6563 GTTGAGGGCATCTTCTTTTCCGGATCTTTTGCGTCTATTTTCTGGATGAAGAAGCGTGGT 6622 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 | |||||| || || ||||| || ||||| | |||||| ||||||| || |||| | | Sbjct 6623 TTGATGCCAGGTCTTACCTTTTCCAACGAGTTGATCAGCCGGGACGAAGGCATGCACACG 6682 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC-----ACAAGCCCTCGAAGGAGC 42897 || ||||| || || || ||| |||||| | | || || |||| || Sbjct 6683 GATTTTGCTTGTCTGCTTTTC---AGCCACTTGAAGCGTCGACCACACCCT-----GATA 6734 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 ||||| |||||||| ||| | || || | || ||| | |||||||| || Sbjct 6735 CTGTCCGAGCCATCATTACGCAAGCGGTTGCCATAGAGCAAGAGTTCCTGAC 6786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941925138486080