Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq204495 149 1e-30 seq204373 100 7e-16 seq203754 89.7 1e-12 >seq204495 Length=136544 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || ||||| |||| ||| || || |||||||| ||||||| Sbjct 14674 CCGCCACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCGGAA 14733 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || |||||||| || | |||||| || || ||||||| || || ||| || Sbjct 14734 AGAGTTCGTCCGTCCTCGAGTTGTTTGCCGGCAAAGATCAAGCGTTGCTGATCGGGAGGA 14793 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || ||||||||||| || |||| |||| ||||| || Sbjct 14794 ATGCCTTCCTTGTCTTGGATCTTTGCTTTCACGTTGTCGATAGTATCGGATGATTCGACC 14853 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | |||||| ||||||||||| || ||||| ||||| || ||||| Sbjct 14854 TCCAACGTGATGGTCTTCCCGGTGAGCGTCTTCACGAAAATTTGCAT 14900 Score = 84.2 bits (92), Expect = 5e-11 Identities = 89/116 (77%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||| | || || ||||||| ||| || ||||| || ||||||| Sbjct 14898 CATG-CCTCCACGGAGACGCAGGACAAGATGAAGGGTGGACTCCTTTTGAATGTTATAGT 14956 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 | | |||||||||||| ||||| | ||| || || ||||| || ||||| |||||| Sbjct 14957 CCGAGAGCGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAAATAAGACGTTGTTGA 15012 >seq204373 Length=135162 Score = 100 bits (110), Expect = 7e-16 Identities = 172/245 (70%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 326078 TCGGTCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCG 326137 |||||||| ||||||| || || || ||||| || || | || | || |||| | Sbjct 106802 TCGGTCATTATCATCAGTTGCCCATATCGAAGAGAAGATGCATCCGTATAGTCTTTGTTG 106743 Query 326138 GTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGC 326196 || || || | |||| |||| | ||| ||| |||||||||||| |||| ||| Sbjct 106742 TGCTGCAGACCCATGATTTTCTTGATGTTCTG-GATCTCTTCGTTCTTCATGAT--TTGA 106686 Query 326197 CACGGAT--GCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTC 326254 | | || || ||||||||||| |||||||| |||||||| || |||||| | | Sbjct 106685 TCGTGCTTTGCCTCCCGGACGTTCAACAGTTTTCCTCGAAGAGGAAAGACTCCAAAATTG 106626 Query 326255 TCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTC 326314 || | ||||| ||| || || |||| || || | | |||||||| ||||||||| Sbjct 106625 TCCCTGCCGACAACGCCAAGTCCGGCGACAGCGAGCGCCTTAGCGGAATCGCCCTCCGTC 106566 Query 326315 AGAAT 326319 ||||| Sbjct 106565 AGAAT 106561 >seq203754 Length=64599 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 |||||||| || || ||||| ||||| || || || || | |||| ||| ||||| ||| Sbjct 291 CCTTCTTTGTCTTGTATTTTTGCTTTGACATTGTCGATTGTATCGGACGACTCTACCTCG 232 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||| || || || || ||||| |||||||| Sbjct 231 AGGGTAATCGTCTTCCCCGTGAGGGTTTTCACGAAAATCTGCAT 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176563400236424