Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq201019 107 4e-18 seq204373 96.9 8e-15 seq204124 87.8 4e-12 >seq201019 Length=96896 Score = 107 bits (118), Expect = 4e-18 Identities = 125/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 243561 GCTTATTGGCATGAACTCTGAAC-TCATGGGACAGTACATCGAATTCGTAGCCGACCGCA 243619 ||| ||||||||||| | || | | ||| | || ||||| ||||| || || ||||| Sbjct 29657 GCTGATTGGCATGAA-TGCGACCTTGATGTGCCAATACATTGAATTTGTCGCAGACCGTC 29715 Query 243620 TTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGG 243679 |||| | ||||||| |||| || || || ||||| | ||||||||| | ||| |||| Sbjct 29716 TTTTGGTGTCGCTTGGAAATGACAAGGTCTATAACTCAACGAACCCCTTCGACTTCATGG 29775 Query 243680 AGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | | || ||||| ||||| ||||| ||||| |||||||| || || Sbjct 29776 ACATGATCTCGCTCCAAGGCAAAACGAACTTTTTCGAAAAACGCGT 29821 >seq204373 Length=135162 Score = 96.9 bits (106), Expect = 8e-15 Identities = 171/245 (70%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 298199 TCGGTCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCG 298258 |||||||| ||||||| || || || ||||| || || | || | || |||| | Sbjct 106802 TCGGTCATTATCATCAGTTGCCCATATCGAAGAGAAGATGCATCCGTATAGTCTTTGTTG 106743 Query 298259 GTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGC 298317 || || || | |||| |||| | ||| ||| |||||||||||| |||| ||| Sbjct 106742 TGCTGCAGACCCATGATTTTCTTGATGTTCTG-GATCTCTTCGTTCTTCATGAT--TTGA 106686 Query 298318 CACGGAT--GCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTC 298375 | | || || ||||| ||||| |||||||| |||||||| || |||||| | | Sbjct 106685 TCGTGCTTTGCCTCCCGGACGTTCAACAGTTTTCCTCGAAGAGGAAAGACTCCAAAATTG 106626 Query 298376 TCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTC 298435 || | ||||| ||| || || |||| || || | | |||||||| ||||||||| Sbjct 106625 TCCCTGCCGACAACGCCAAGTCCGGCGACAGCGAGCGCCTTAGCGGAATCGCCCTCCGTC 106566 Query 298436 AGAAT 298440 ||||| Sbjct 106565 AGAAT 106561 >seq204124 Length=22413 Score = 87.8 bits (96), Expect = 4e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 243565 ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTC 243624 |||||||||||| | |||||| | || ||||| || || ||||| || ||| | | Sbjct 6873 ATTGGCATGAACGCGACCCTCATGTGCCAATACATTGAGTTTGTAGCTGATCGCCTGCTG 6932 Query 243625 ATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTC 243684 || || | || | || |||||||| || || | || || |||| |||||||| | Sbjct 6933 GTCTCGTTGGGCAACGATAAAGTGTATAATTCGACCAATCCGTTTGATTTTATGGATATG 6992 Query 243685 ATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 || ||||| ||||| || || ||||| ||||| ||||| || Sbjct 6993 ATATCGCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGCGT 7033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1099990169029800