Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq204124 100 3e-16 seq204495 96.9 3e-15 seq201019 87.8 2e-12 >seq204124 Length=22413 Score = 100 bits (110), Expect = 3e-16 Identities = 122/164 (74%), Gaps = 12/164 (7%) Strand=Plus/Plus Query 52671 GGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTG 52730 |||||||||||| ||||||| | ||||| |||||||| || ||||| ||| |||| Sbjct 6876 GGCATGAACGCGACCCTCATGTGCCAATACATTGAGTTTGTAGCTGATCGCCTGCTGGTC 6935 Query 52731 CAGCTCGGGCAGCCA--AAGT----ACTTCAACGCTCGCAATCCGTTTGAGTTTATGAAC 52784 | | ||||| | | |||| | ||| || |||||||||||| |||||| | Sbjct 6936 TCGTT-GGGCAACGATAAAGTGTATAATTCGAC-----CAATCCGTTTGATTTTATGGAT 6989 Query 52785 AACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 | || ||||| | |||||||||||||||||||||||||| || Sbjct 6990 ATGATATCGCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGCGT 7033 >seq204495 Length=136544 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || ||||||||| | ||| || ||||||||||||||| |||| | Sbjct 14707 GACTCCTTCTGGATATTGTAGTCGGAAAGAGTTCGTCCGTCCTCGAGTTGTTTGCCGGCA 14766 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | || || || || ||||| || ||||| ||||| ||| ||| ||| | Sbjct 14767 AAGATCAAGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGGATCTTTGCTTTCACG 14826 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || |||| || || ||||| | ||| | || || || || || || || Sbjct 14827 TTGTCGATAGTATCGGATGATTCGACCTCCAACGTGATGGTCTTCCCGGTGAGCGTCTTC 14886 Query 138601 ACAAAAATCTGCATGGCT 138618 || ||||| |||||| || Sbjct 14887 ACGAAAATTTGCATGCCT 14904 >seq201019 Length=96896 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 52344 AAGGCTCAGTGGGCAATGAAGTGGAT---CGAGAGCGACACCGCCACGCTGGCCGAGCGC 52400 ||||| | ||||| |||||||||| ||| | | | | |||| | || ||||| Sbjct 29286 AAGGCAGACTGGGCCTTGAAGTGGATATCCGACA---AAAGCTCCACTTTTGCAGAGCGT 29342 Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460 |||| || || ||| || || || | || || || ||| ||||| |||||||| Sbjct 29343 CTGGTCGCGTTTGCCGCTGTTGAAGGGATTTTCTTCTCGGGCTCGTTTGCGTCCATCTTT 29402 Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520 | || |||| | |||| | ||||||||||| || ||| ||| ||| | || ||| Sbjct 29403 TGGATGAAAAAGCGAGGCCTGATGCCCGGCCTTACTTTCTCCAATGAGCTCATCAGCCGC 29462 Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCTC 52553 || || || ||||||| |||||||| |||||| Sbjct 29463 GATGAGGGGATGCACACCGACTTTGCTTGCCTC 29495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494993779613760