Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq204124 125 9e-24 seq201019 111 2e-19 >seq204124 Length=22413 Score = 125 bits (138), Expect = 9e-24 Identities = 203/287 (71%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| | || ||||| ||| ||| | || || || ||| ||||| Sbjct 6691 AGCAAAATCCGTGTGCATGCCTTCGTCCCGGCTGATCAACTCGTTGGAAAAGGTAAGACC 6632 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGA 127637 |||||| | ||| |||||||||| ||||||||| | | ||||| || || || ||||||| Sbjct 6631 TGGCATCAAACCACGCTTCTTCATCCAGAAAATAGACGCAAAA-GATCCGGAAAAGAAGA 6573 Query 127638 TCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCA- 127696 | ||||| ||| ||||| || | ||||| || | || | || | |||||| | Sbjct 6572 TGCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCGAATG-TCGAGTCTTTGTCGGAT 6514 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 | ||| || | ||||| | ||||| | ||| ||||||| ||||| || || ||| Sbjct 6513 ATCCAATTGAGTGCCCAGTCGGCCTTGCGTTTGATGCATGGGATGGTCTCGACAGCGTCA 6454 Query 127757 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 ||||| | || ||| | ||| || ||||||||| |||| ||||| Sbjct 6453 AAGAGGTACTCGCGTTCGGCTGGGTCCTTGATGTACGTATCGATGAG 6407 >seq201019 Length=96896 Score = 111 bits (122), Expect = 2e-19 Identities = 343/522 (66%), Gaps = 9/522 (2%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| | ||||| || ||| |||||| ||||| ||||| || || Sbjct 29489 AGCAAAGTCGGTGTGCATCCCCTCATCGCGGCTGATGAGCTCATTGGAGAAAGTAAGGCC 29430 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| || || ||||| |||| ||| || || | ||| ||||| |||||||| || Sbjct 29429 GGGCATCAGGCCTCGCTTTTTCATCCAAAAGATGGACGCAAACGAGCCCGAGAAGAAAAT 29370 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698 ||| || ||| || ||||| | |||||||| ||||| | | | | ||||| | | Sbjct 29369 CCCTTCAACAGCGGCAAACGCGACCAGACGCTCTGCAAAAGTG-GAGCTTTTGTCGGATA 29311 Query 127699 -CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 |||||||| ||||| | |||||| | |||||| || | ||| | | || |||| Sbjct 29310 TCCACTTCAAGGCCCAGTCTGCCTTCCGTTTGATACAGGGAATGGTTTCAACGGCATCAA 29251 Query 127758 AGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817 | || | | || ||| ||||||||||| | || ||||| || ||||| | Sbjct 29250 AAAGATATTCGCGCTCCACTGGGTCTTTGATGTAGGTGTCGATGAGGAGGGAGTATGTCT 29191 Query 127818 CGCCGTGGACCATTT-CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATC 127876 || |||| ||| ||| || | ||| | | ||||| | || || ||| Sbjct 29190 CGGAATGGATATTTTCCATCAT-GATCTGGAAGCCATAGAAGCACCGGGCCTCGGCAGCT 29132 Query 127877 TGTACCTCATCGGCAAAATTGTTAT-TGATATTCTCAAAAACAATTCCATCGGACCCAGC 127935 || || |||| | | || ||| | | ||||| || || || |||||| | || Sbjct 29131 TGAACTTCATTAG-AGAAACGTTCTACCAAGTTCTCGTTGACTATGCCGTCGGACGCCGC 29073 Query 127936 AAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCA 127992 ||| || || || | | ||||| | | | || || ||||| | | | ||||| Sbjct 29072 AAAGAAGGCGAGAACGTGGGAGATGAAATGCCGCTCGTTGTCGTTTAAACGATTGTTCCA 29013 Query 127993 GTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||||| || |||||||| || || | |||||| || ||||| Sbjct 29012 GTCGTGAAGGTCCTTTGAAAGGTCCATCTCCTCGGCGGTCCA 28971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611938860869280