Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq201019 123 4e-23 seq204124 98.7 2e-15 >seq201019 Length=96896 Score = 123 bits (136), Expect = 4e-23 Identities = 315/471 (67%), Gaps = 10/471 (2%) Strand=Plus/Minus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 ||||||||||| ||||||||| ||||| ||||| || || ||||| ||| ||||| Sbjct 29500 AACAGGAGGCAAGCAAAGTCGGTGTGCATCCCCTCATCGCGGCTGATGAGCTCATTGGAG 29441 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAA--AGCAC 160031 | | ||||| ||||| | || ||| ||| | |||||| |||| |||||| ||| | Sbjct 29440 AAAGTAAGGCCGGGCATCAGGCCTCGCTTTTTCATCCAAAAGATGGACGCAAACGAGC-C 29382 Query 160032 CGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGT 160091 || || ||| ||||| || || || |||||||| || || | ||| |||||| || | Sbjct 29381 CGAGAAGAAA-ATCCCTTCAACAGCGGCAAACGCGACCAGACGCTCTGCAAAAGTGGAGC 29323 Query 160092 TGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCT 160151 | |||| ||||| | |||||| || |||||| | ||| || || ||| | Sbjct 29322 TTTTGTCGGATATCCACTTCAAGGCCCAGTCTGCCTTCCGTTTGATACAGGGAATGGTTT 29263 Query 160152 CGACGGCGTTAAACA-ATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGC 160210 | ||||| | ||| | || | || ||||| || ||||| || | || || Sbjct 29262 CAACGGCATCAAAAAGATAT-TCGCGCTCCACTGGGTCTTTGATGTAGGTGTCGATGAGG 29204 Query 160211 TTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTC 160270 ||||| | || | || | |||||| || ||||| ||| ||||| | Sbjct 29203 AGGGAGTATGTCTCGGAATGGATATTTTCCATCATGATCTGGAAGCCATAGAAGCACCGG 29144 Query 160271 GCCTC--CAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACC 160328 ||||| ||| | || || || | | ||| | || ||| || | || || | | Sbjct 29143 GCCTCGGCAGCT--TGAACTTCATTAGAGAAACGTTCTACCAAGTTCTCGTTGACTATGC 29086 Query 160329 CGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGT 160379 |||||| ||||||||||| || | ||||| ||||||||||| | ||||| Sbjct 29085 CGTCGGACGCCGCAAAGAAGGCGAGAACGTGGGAGATGAAATGCCGCTCGT 29035 >seq204124 Length=22413 Score = 98.7 bits (108), Expect = 2e-15 Identities = 322/496 (65%), Gaps = 12/496 (2%) Strand=Plus/Minus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || || || || ||||| || ||||| || |||||||| ||| ||||||||||| Sbjct 6702 AAAAGCAGACAAGCAAAATCCGTGTGCATGCCTTCGTCCCGGCTGATCAACTCGTTGGAA 6643 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | | || || ||||| | |||||| || | ||| ||||| | |||||||| ||| Sbjct 6642 AAGGTAAGACCTGGCATCAAACCACGCTTCTTCATCCAGAAAATAGACGCAAAAGATCCG 6583 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 ||| ||||| ||||| || || || || || ||||| | || || || | | || Sbjct 6582 GAAAAGAAGATGCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCGAATGTCGAGTCT 6523 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCG 160153 |||| |||| | ||||| || ||||| | |||||| || ||| |||| Sbjct 6522 TTGTCGGATATCCAATTGAGTGCCCAGTCGGCCTTGCGTTTGATGCATGGGATGGTCTCG 6463 Query 160154 ACGGCGTTAAACAATCTGTCCTGCTCCTTC----ACATCCTTGATCAGAGTAGCAATCAG 160209 || |||| ||| | || || | | ||| |||||||| ||| | || || Sbjct 6462 ACAGCGTCAAAGA---GGTACT-CGCGTTCGGCTGGGTCCTTGATGTACGTATCGATGAG 6407 Query 160210 CTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGT 160269 |||||| | || | || | ||||| || || || ||| |||||| | Sbjct 6406 GAGCGAGTATGTCTCCGAATGGATGTTTTCCATCATGATTTGGAAGCCATAGAAACACCG 6347 Query 160270 CGCCTC--CAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAAC 160327 ||||| ||| | || || || | || ||| | | ||||||| | || || | | Sbjct 6346 TGCCTCGGCAGCT--TGAACTTCGTTTGAGAAGCGCTCGACCAGATTCTCGTTGACAATC 6289 Query 160328 CCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTG 160387 ||||| | || || || || || || |||||||| || || || | |||| | |||| Sbjct 6288 CCGTCAGAAGCGGCGAAAAAGGCTAAAACGTGAGAAATAAAGTGGCGTTCGTTGTCGTTG 6229 Query 160388 AGTCTCTTTTCCCAGT 160403 ||| | ||| ||||| Sbjct 6228 AGTTTGTTTGTCCAGT 6213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793122505004480