Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq204495 134 3e-26 seq204496 95.1 3e-14 seq203754 93.3 1e-13 >seq204495 Length=136544 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| |||||||| |||| |||||||| | | ||| | ||| || Sbjct 14689 AGGACGAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTTCGTCCGTCC 14748 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || ||||| ||||| | || ||||| || ||| ||| ||||| || Sbjct 14749 TCGAGTTGTTTGCCGGCAAAGATCAAGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCT 14808 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| |||||| |||| || || | || ||| || ||||||||||| ||| Sbjct 14809 TGGATCTTTGCTTTCACGTTGTCGATAGTATCGGATGATTCGACCTCCAACGTGATGGTC 14868 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| |||||||| Sbjct 14869 TTCCCGGTGAGCGTCTTCACGAAAATTTG 14897 Score = 95.1 bits (104), Expect = 3e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 || || |||||||| ||||| ||||| || |||||||| || || ||| || || Sbjct 14518 TCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTG 14577 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 ||||| ||||| ||||||| |||| |||||| | | ||||| ||||| ||||| Sbjct 14578 TCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGACGACTCTACCTCCAAGGTGATG 14637 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || | || ||||||||||| || Sbjct 14638 GTCTTGCCTGTCAACGTCTTCACAAAAATCTG 14669 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||||||||| || || || ||||||||||| | ||| ||||| | | || Sbjct 14908 CGGAGACGCAGGACAAGATGAAGGGTGGACTCCTTTTGAATGTTATAGTCCGAGAGCGTG 14967 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 | ||||||||| || ||||| |||||||| || ||||| || || || ||| Sbjct 14968 CGTCCATCTTCGAGTTGCTTGCCGGCGAAAATAAGACGTTGTTGATCGGGA 15018 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || ||||| |||||||||||||||| ||| || || | || || | || || Sbjct 15200 AGGACGAGATGGAGGGTCGACTCCTTTTGGATGTTATAATCCGATAAGGTGCGACCGTCC 15259 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || || ||||| ||||||||||| | ||| || |||||||| Sbjct 15260 TCAAGTTGCTTCCCGGCGAAGATCAAACGTTGTTGGTCCGG 15300 >seq204496 Length=81202 Score = 95.1 bits (104), Expect = 3e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||||||||||||||| | ||| ||||| |||||| | ||||| ||||| ||| Sbjct 37349 TGAAGAGTCGACTCCTTTTGAATGTTATAGTCGCTCAAAGTGCGACCATCCTCCAGTTGC 37408 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || || ||||||||||||||||| ||||| || Sbjct 37409 TTGCCCGCGAAGATGAGACGCTGTTGGTCGGG 37440 >seq203754 Length=64599 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || ||||||||||| ||||| | ||| ||||| ||| || | ||||| Sbjct 451 AGGACGAGATGAAGAGTCGACTCTTTTTGAATGTTATAGTCGCTCAATGTTCGGCCATCC 392 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || ||||| ||||| ||||| ||||||||||| |||||||| Sbjct 391 TCAAGCTGTTTTCCCGCGAAAATGAGACGCTGTTGGTCCGG 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175832520362036