Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq201019 279 5e-70 seq204124 235 5e-57 seq204496 98.7 1e-15 >seq201019 Length=96896 Score = 279 bits (308), Expect = 5e-70 Identities = 401/561 (71%), Gaps = 7/561 (1%) Strand=Plus/Minus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 |||||| | ||||||||||||| |||| ||||| || | | ||||| || ||| Sbjct 29502 TGAACAGGAGGCAAGCAAAGTCGGTGTGCATCCCCTCATCGCGGCTGATGAGCTCATTGG 29443 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 |||||| | ||||||||| ||||| || ||||| | |||||| |||| || || || Sbjct 29442 AGAAAGTAAGGCCGGGCATCAGGCCTCGCTTTTTCATCCAAAAGATGGACGCAAACGAGC 29383 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 |||| ||||| | || || || || || || || ||||| ||||| | || |||| Sbjct 29382 CCGAGAAGAAAATCCCTTCAACAGCGGCAAACGCGACCAGACGCTCTGCAAAAGTGGAGC 29323 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 |||| || ||||| || ||||| || ||||| ||||| || || || |||| Sbjct 29322 TTTTGTCGGATATCCACTTCAAGGCCCAGTCTGCCTTCCGTTTGATACAGGGAATGGTTT 29263 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAG 133181 | | ||| | ||| ||| | | | || | || | | ||||||||||||||| Sbjct 29262 CAACGGCAT-CAA-AAAGATATTCGCGCTCCACTGGGTCTTTGATGTAGGTGTCGATGAG 29205 Query 133182 GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCG 133241 | || || | || || || | || ||||| ||| || ||||| || |||||||| Sbjct 29204 GAGGGAGTATGTCTCGGAATGGATATTTTCCATCATGATCTGGAAGCCATAGAAGCACCG 29145 Query 133242 CGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCC 133301 |||||| | | || ||||| | || |||||| || |||| || |||||||| ||||| Sbjct 29144 GGCCTCGGCAGCTTGAACTTCATTAGAGAAACGTTCTACCAAGTTCTCGTTGACTATGCC 29085 Query 133302 GTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA 133361 |||| || || || ||||| || ||||| ||||||||| |||||||||||||| || Sbjct 29084 GTCGGACGCCGCAAAGAAGGCGAGAACGTGGGAGATGAAATGCCGCTCGTTGTCGTTTAA 29025 Query 133362 GCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGA 133418 || | ||||||| | |||||| || ||||||| ||||||| ||||||| ||||| Sbjct 29024 ACGATTGTTCCAGTCGTGAAGGTCCTTTGAAAGGTCCATCTCCTCGGCGGTCCAGAACGA 28965 Query 133419 CGCCTCGGCTTTTTTGTACAT 133439 ||||| ||||| |||||||| Sbjct 28964 AGCCTCCGCTTTCTTGTACAT 28944 >seq204124 Length=22413 Score = 235 bits (260), Expect = 5e-57 Identities = 398/573 (69%), Gaps = 15/573 (3%) Strand=Plus/Minus Query 132876 CAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAG 132935 ||| || |||| | || |||||||| || |||| ||| ||||||| | || | Sbjct 6712 CAAGTGGCTGAAAAGCAGACAAGCAAAATCCGTGTGCATGCCTTCGTCCCGGCTGATCAA 6653 Query 132936 TTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGC 132995 |||||| || || | || ||||| | || || || || | ||| || || | || Sbjct 6652 CTCGTTGGAAAAGGTAAGACCTGGCATCAAACCACGCTTCTTCATCCAGAAAATAGACGC 6593 Query 132996 GAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAA 133055 ||| || |||||||||| |||||| || || |||||||| || || || || ||||| Sbjct 6592 AAAAGATCCGGAAAAGAAGATGCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCGAA 6533 Query 133056 CGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 || | |||||| || ||||| || ||||| |||||||| ||||| ||| || Sbjct 6532 TGTCGAGTCTTTGTCGGATATCCAATTGAGTGCCCAGTCGGCCTTGCGTTTGATGCATGG 6473 Query 133116 CATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTC---TTCCGAGGAACGC---ACGTA 133169 || || |||| |||| |||| ||| | ||| ||| | | | | ||| Sbjct 6472 GATGGTCTCGACAGCGT----CAAA--GAGGTACTCGCGTTCGGCTGGGTCCTTGATGTA 6419 Query 133170 GGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCC 133229 || ||||||||| ||| || | ||||| || | ||| ||||| |||||| ||||| Sbjct 6418 CGTATCGATGAGGAGCGAGTATGTCTCCGAATGGATGTTTTCCATCATGATTTGGAAGCC 6359 Query 133230 GTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTC 133289 || || ||||| |||||| | | || ||||| | | ||| |||||||||||||| || Sbjct 6358 ATAGAAACACCGTGCCTCGGCAGCTTGAACTTCGTTTGAGAAGCGCTCGACCAGATTCTC 6299 Query 133290 GTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTC 133349 |||||| || ||||| |||||||||||||| | ||||| || || ||||| || Sbjct 6298 GTTGACAATCCCGTCAGAAGCGGCGAAAAAGGCTAAAACGTGAGAAATAAAGTGGCGTTC 6239 Query 133350 GTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGAC 133406 ||||||||| | | ||||||| | |||||| |||| ||||| ||||| | Sbjct 6238 GTTGTCGTTGAGTTTGTTTGTCCAGTCGTGAAGGTCCTTCGACAAGTCCATTTCCTCTGC 6179 Query 133407 GGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||||||| || || ||||| || ||||| Sbjct 6178 AGTCCAAAACGAAGCTTCAGCTTTCTTATACAT 6146 >seq204496 Length=81202 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 ||||||||||||| ||||| | ||||||||| || ||||| || | ||||| | | || Sbjct 37439 CCGACCAACAGCGTCTCATCTTCGCGGGCAAGCAACTGGAGGATGGTCGCACTTTGAGCG 37380 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||| ||||| |||||||| |||| || ||||||||||| ||| Sbjct 37379 ACTATAACATTCAAAAGGAGTCGACTCTTCATTTGGTGCTTCGT 37336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498894183262720