Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq204304 172 7e-38 seq203756 120 4e-22 seq201019 86.0 8e-12 >seq204304 Length=128263 Score = 172 bits (190), Expect = 7e-38 Identities = 537/841 (64%), Gaps = 54/841 (6%) Strand=Plus/Plus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 || || || || || | || ||||| || || || |||||||||||||| | || || Sbjct 50935 ATCGCAGCCTGCACAGCGGCACCGTACGCAACAGCTTCATCGGGGTTAATGCTCTTGTTG 50994 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACAT-TTGTTGAATTTTCGGGATTCGTGTCGA 7140 | || || ||||| ||| | || || | | || ||| | || || || || || Sbjct 50995 GGCTCCTTGCCGTTGAAAAAGTCGGACACAAGCTTCATGATACGT-GGAATACGAGTGGA 51053 Query 7141 TCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGT 7200 || || || | ||| || |||| || || | || |||||||| || || ||||| Sbjct 51054 GCCGCCAACGAGAACTATCTCATGGACGTTGGCCTTGTCGATCTTGGAATCGCGAAGCAC 51113 Query 7201 TTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGC 7260 || || || || || | ||||||||||||| || || |||||||| || || Sbjct 51114 CTTCTCCACGGGCTCAAGGGTGCCACGGAACAAGTCCTGGCAGAGCTCCTCAAAGCGGGC 51173 Query 7261 ACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGT 7320 |||||| | ||||| || || || | ||| ||| | | |||||| || || |||| || Sbjct 51174 ACGGGTGAGAGATGTGTAAAAGTCGATGCCTTCGAAGAGCGAATCGATCTCGATGGAGGT 51233 Query 7321 TTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAG 7380 ||| | | || || | || ||||| || || || || || |||| | ||| |||| Sbjct 51234 TTGAGTGGCAGATGAGAGAGTGCGCTTGGCACGTTCGCAGGCGGTTCTCAGACGGCGAAC 51293 Query 7381 GGCACGCGGGTT----------------------------------ACCGGAA-----AT 7401 |||||| ||||| || |||| || Sbjct 51294 GGCACGGGGGTTGGAAGAAAGATCTACAAACGAATGAGTAAAACGCACGGGAAGAAGGAT 51353 Query 7402 -------------ATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGA 7448 | |||| || | ||||| || ||||||| | ||||| | || Sbjct 51354 TGAAAGCAAACGCACCTTTTTTGTTCTTACGCTTGAACTCTTGAACAAAGTGGTTCACGA 51413 Query 7449 GTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAA 7508 | | |||||||| || || ||||| ||||| || || ||||| || |||||||| | Sbjct 51414 GACGGTTGTCGAAATCCTCGCCGCCCAAATGTGTGTCTCCTGCGGTGGCCTTGACTTCGA 51473 Query 7509 AGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAA 7568 | || ||| |||| || | | | ||||||||| ||||| || || || || || || | Sbjct 51474 AAATGCCTTCTTCGATTGTGAGAAGCGAAACATCGAACGTGCCTCCTCCGAGATCGAAGA 51533 Query 7569 TGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCG 7628 | | || || || | | ||||| || |||||||| || || || || || | Sbjct 51534 TCAACACATTGCGCTCTCCCACAACCTTCTTGTCAAGACCGTATGCAATGGCGGCGGCAG 51593 Query 7629 TTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCG 7688 | || || || || ||||| || ||||| ||||| || || | ||||| || || | Sbjct 51594 TAGGCTCGTTGATGATACGGAGGACGTTCATGCCAGAGATGGTACCAGCATCCTTTGTTG 51653 Query 7689 CTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCT 7748 | || ||||| || ||||| ||||| || || || || ||||| |||| | | Sbjct 51654 CCTGCCGTTGGGAGTCGTTGAAGTAAGCGGGAACGGTGACGACGGCGTTGTTAATCGGGG 51713 Query 7749 TACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTT 7808 | || || || ||||| || | |||||||| || || ||||| || ||||| |||| Sbjct 51714 TTCCAAGGTAAGATTCGGCCGTCTCTTTCATCTTCAAGAGGACCATGGAAGAAATTTCTT 51773 Query 7809 C 7809 | Sbjct 51774 C 51774 Score = 114 bits (126), Expect = 2e-20 Identities = 117/152 (77%), Gaps = 3/152 (2%) Strand=Plus/Plus Query 7964 GTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTA 8023 ||||||| ||| ||||| || ||| ||||| || ||||| ||||||||||| |||||| Sbjct 52028 GTGTTTTGGGGATTCATCGCAACTTGATTCTTGGCAGCGTCTCCGATAAGACGCTCATTA 52087 Query 8024 TTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATT 8083 || | || | |||||| || || || || ||||| || || ||||| || |||||| Sbjct 52088 ---TCGGAGAAAGAGACGTAAGAGGGCGTTGTGCGATTTCCCTGATCGTTGGCGATAATT 52144 Query 8084 TCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || || |||| ||||||||| ||||| || Sbjct 52145 TCAACACGATCGTGTTGCCAGACACCGACACA 52176 >seq203756 Length=38952 Score = 120 bits (132), Expect = 4e-22 Identities = 259/382 (68%), Gaps = 8/382 (2%) Strand=Plus/Plus Query 7345 CTTTGCGCGCTCACACGCCGTTCGTAA-ACGACGAAGGGCACGCGGGTTACCGGAAATAT 7403 ||| ||||| ||||| || | || ||| ||| | || ||||| || | | |||| || | Sbjct 29626 CTTGGCGCGTTCACAAGC-GCTCCTAAGACGCCTGAGAGCACGGGGATCATCGGATATGT 29684 Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463 | ||| || | ||||| || | ||| ||| ||||| | ||||||| Sbjct 29685 CAAGCTTGGACTTCCTCTTAAATTCGTTTTTGAAATGTTCGAGGAGGGTGTTGTCGAAAT 29744 Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523 ||||||| ||||| || ||||| || ||||| || |||||| |||||| ||| || | | Sbjct 29745 CTTCACCTCCCAAATGGGTATCGCCAGCGGTGGCCTTGACTGCAAAGACACCCCCGTTGA 29804 Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTAT 7583 ||| | | ||||| ||||| || || ||||| || || || ||||| |||||| | | Sbjct 29805 TGTGGAGGAGGGAAACGTCAAAAGTTCCTCCACCGAGATCGAAGATGAGAACGTTCTTCT 29864 Query 7584 CGTCGTCTTTGTTCTTA---TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAA 7640 | || |||| | | | || ||||| || || || || || || || ||||| || | Sbjct 29865 C--AGTTTTTGAT-TGACGGTCAAGACCATAAGCAATGGCAGCAGCGGTAGGTTCGTTGA 29921 Query 7641 TAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCG 7700 | || || ||| | ||||||| ||| | | || || || || || || || | Sbjct 29922 TGATGCGGAGAACCTCAAGGCCAGAAATGGAACCAGCGTCCTTGGTGGCCAACCGCTGAG 29981 Query 7701 AATCGTTAAAGTAGGCCGGGAC 7722 | ||||| ||||| || || || Sbjct 29982 AGTCGTTGAAGTATGCGGGAAC 30003 >seq201019 Length=96896 Score = 86.0 bits (94), Expect = 8e-12 Identities = 160/230 (70%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 115351 GCAAATTCTTGGTGCATACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAAACCT 115410 ||||| || |||||| || ||||| || || ||||| ||||| ||| | || Sbjct 29488 GCAAAGTCGGTGTGCATCCCCTCATCGCGGCTGATGAGCTCATTGGAGAAAGTAAGGCCG 29429 Query 115411 GGAAGTAACCCTCTCTTTTTTAACCAAAAAATAGCACAAAAACTA-CCCGAGAAGAATAT 115469 || | | |||| |||||| | |||||| || | || |||| | ||||||||||| || Sbjct 29428 GGCATCAGGCCTCGCTTTTTCATCCAAAAGATGG-ACGCAAACGAGCCCGAGAAGAAAAT 29370 Query 115470 ACCTTCAACACACGCAAAGGCTAATAAACGTTCAGCAAA--TGG-TCGTTTCTTATCAAA 115526 ||||||||| ||||| || | | ||| || ||||| ||| | ||| | | Sbjct 29369 CCCTTCAACAGCGGCAAACGCGACCAGACGCTCTGCAAAAGTGGAGCTTTTGTCGGATAT 29310 Query 115527 CCACTTCATAGCCCATTTCGCCTTTCTTTCGATACACGGAATTGTTTGAA 115576 |||||||| ||||| | ||||| | || |||||| ||||| |||| || Sbjct 29309 CCACTTCAAGGCCCAGTCTGCCTTCCGTTTGATACAGGGAATGGTTTCAA 29260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633509178266720