Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq203715 82.4 9e-11 >seq203715 Length=28578 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48221 ATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATT 48280 ||| || |||||||| || ||| || || | || | ||| || |||||| ||| Sbjct 23025 ATCAGGAATCCAAAGGGCATAAAACAAGTCACGAGCACGAGATTCCTCCTTGCCATGATT 22966 Query 48281 CCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCAT 48340 | || || | ||||| | || || || ||||| ||||| | || || || | Sbjct 22965 TTTGCGCAGATCCAAGAAGTCAAAGATGTCGGCGTGCCACGGTTCGATGTAGATAGCAAA 22906 Query 48341 TACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCT 48400 |||| || ||||| || || |||||||| | ||||| || || || ||| ||| Sbjct 22905 AGCACCCGGACGTTTGTTGCCACCTTGATCAACGTATCTTGCTGTGGCGTCATACGCTCG 22846 Query 48401 TAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448 ||||||||| || || || ||||| |||||||||||| | ||| || Sbjct 22845 TAACATTGGAACGATGCCGTTTGAGTAACCATTGGTTCCAGCAATGTA 22798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560671853169120