Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq204124 232 1e-55 seq201019 197 3e-45 seq203715 89.7 1e-12 >seq204124 Length=22413 Score = 232 bits (256), Expect = 1e-55 Identities = 392/566 (69%), Gaps = 9/566 (2%) Strand=Plus/Minus Query 48125 AGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAG 48184 |||| || ||||| ||| |||||| |||||||||||||||||| | | ||||||| ||| Sbjct 6699 AGCAGACAAGCAAAATCCGTGTGCATGCCTTCGTCCCGGCTGATCAACTCGTTGGAAAAG 6640 Query 48185 CAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAG 48244 ||||| ||||| | || | || || | ||||||||| | ||| ||||| || || Sbjct 6639 GTAAGACCTGGCATCAAACCACGCTTCTTCATCCAGAAAATAGACGCAAAAGATCCGGAA 6580 Query 48245 AAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTG 48304 |||||||||||||| || || ||||| ||| ||| | |||||||| | | || ||| Sbjct 6579 AAGAAGATGCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCGAATGTCGAGTCTTTG 6520 Query 48305 TCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATG 48364 || || ||||| || |||||||| ||||| ||||||||||| || ||||| | Sbjct 6519 TCGGATATCCAATTGAGTGCCCAGTCGGCCTTGCGTTTGATGCATGGGATGGTCTCGACA 6460 Query 48365 GCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTA---GTGAGCAGCTTT 48421 || ||||| | || || || ||| |||| | || ||| |||| ||| Sbjct 6459 GCGTCAAAGAGGTACTCGCGTTCGGCTGGGTCCTTGATGTACGTATCGATGAGGAGC--- 6403 Query 48422 GCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481 | ||| |||| || || | || || || ||| ||||| || ||||| || ||| Sbjct 6402 GAGTATGTCTCCGAATGGATGTTTTCCATCATGATTTGGAAGCCATAGAAACACCGTGCC 6343 Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCT 48541 || | || ||||| | ||||| | ||| | ||||||||| ||||| ||||| || Sbjct 6342 TCGGCAGCTTGAACTTCGTTTGAGAAGCGCTCGACCAGATTCTCGTTGACAATCCCGTCA 6283 Query 48542 GAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCA 48601 ||||| || || ||||| | || || || || ||||| ||||||| | |||| Sbjct 6282 GAAGCGGCGAAAAAGGCTAAAACGTGAGAAATAAAGTGGCGTTCGTTGTCGTTGAGTTTG 6223 Query 48602 T---TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCG 48658 | ||||| | || | ||| || || ||||| ||| || ||||||| || || || Sbjct 6222 TTTGTCCAGTCGTGAAGGTCCTTCGACAAGTCCATTTCCTCTGCAGTCCAAAACGAAGCT 6163 Query 48659 AGTGCTTTTTTGTACATGCCCCATAT 48684 ||||| || ||||| |||||| Sbjct 6162 TCAGCTTTCTTATACATCTGCCATAT 6137 >seq201019 Length=96896 Score = 197 bits (218), Expect = 3e-45 Identities = 379/558 (68%), Gaps = 3/558 (1%) Strand=Plus/Minus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||| |||||||| |||||| || || || |||||||||||| | |||||||| || Sbjct 29492 GCAAGCAAAGTCGGTGTGCATCCCCTCATCGCGGCTGATGAGCTCATTGGAGAAAGTAAG 29433 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 || ||||| | || | || ||| | ||| || || | ||| || ||||| |||||||| Sbjct 29432 GCCGGGCATCAGGCCTCGCTTTTTCATCCAAAAGATGGACGCAAACGAGCCCGAGAAGAA 29373 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 || || || || || || |||||| || | |||| | |||| | | | ||||| || Sbjct 29372 AATCCCTTCAACAGCGGCAAACGCGACCAGACGCTCTGCAAAAGTGGAGCTTTTGTCGGA 29313 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 ||||| | ||||||||||||||| ||||| || || || || || | ||| Sbjct 29312 TATCCACTTCAAGGCCCAGTCTGCCTTCCGTTTGATACAGGGAATGGTTTCAACGGCATC 29253 Query 48370 GAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACAT 48429 || || | | || ||| ||| ||| | ||||| || || | ||| | Sbjct 29252 AAAAAGATATTCGCGCTCCACTGGGTCTTTGATGTAGGTGTCGATGAGGAGGGAGTATGT 29193 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||| || || | ||| || || ||||||||| || |||||| || |||||| | Sbjct 29192 CTCGGAATGGATATTTTCCATCATGATCTGGAAGCCATAGAAGCACCGGGCCTCGGCAGC 29133 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 || ||||| | ||||| | || | || ||||| |||||||| || || || || || Sbjct 29132 TTGAACTTCATTAGAGAAACGTTCTACCAAGTTCTCGTTGACTATGCCGTCGGACGCCGC 29073 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA---GAGCATTCCA 48606 ||||||||| || || || | |||||| |||||||||| | | | || ||||| Sbjct 29072 AAAGAAGGCGAGAACGTGGGAGATGAAATGCCGCTCGTTGTCGTTTAAACGATTGTTCCA 29013 Query 48607 GCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTT 48666 | | || | ||| || ||||||| || || | |||||||| || || ||||| Sbjct 29012 GTCGTGAAGGTCCTTTGAAAGGTCCATCTCCTCGGCGGTCCAGAACGAAGCCTCCGCTTT 28953 Query 48667 TTTGTACATGCCCCATAT 48684 |||||||| |||||| Sbjct 28952 CTTGTACATTTGCCATAT 28935 >seq203715 Length=28578 Score = 89.7 bits (98), Expect = 1e-12 Identities = 77/95 (81%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 213888 TTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCA 213947 |||||||||||||| | |||||||||||||| ||||||||||| || |||||||| ||| Sbjct 22967 TTTTTGCGCAGATCCAAGAAGTCAAAGATGTCGGCGTGCCACGGTTCGATGTAGATAGCA 22908 Query 213948 AAGGCGCCCGGCC---TCTTGCCGCCCTGGTCCAC 213979 || || ||||| | | ||||| || || || || Sbjct 22907 AAAGCACCCGGACGTTTGTTGCCACCTTGATCAAC 22873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929151476126720