Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq201019 196 9e-45 seq204124 158 2e-33 seq203715 86.0 1e-11 >seq201019 Length=96896 Score = 196 bits (216), Expect = 9e-45 Identities = 391/575 (68%), Gaps = 11/575 (2%) Strand=Plus/Plus Query 25469 ACAAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGA 25528 || || | |||||| | ||||||||||| || | || |||||||||||| |||| Sbjct 28927 ACCAACAGATATGGCAAATGTACAAGAAAGCGGAGGCTTCGTTCTGGACCGCCGAGGAGA 28986 Query 25529 TTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGAC---GAGCAGCATT 25585 | || || | |||||| | ||| |||| || || | || ||| |||| ||||| Sbjct 28987 TGGACCTTTCAAAGGACCTTCACGACTGGAACAATCGTTTAAACGACAACGAGCGGCATT 29046 Query 25586 TTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGT 25645 | || |||| | || |||||||| || || || || ||||| |||||||| || Sbjct 29047 TCATCTCCCACGTTCTCGCCTTCTTTGCGGCGTCCGACGGCATAGTCAACGAGAACTTGG 29106 Query 25646 GCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGA 25705 || | ||| | | ||||| || | |||||| ||| ||||| || ||||||| Sbjct 29107 TAGAACGTTTCTCTAATGAAGTTCAAGCTGCCGAGGCCCGGTGCTTCTATGGCTTCCAGA 29166 Query 25706 TGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTA 25762 | || |||||| | || || ||| || || || || || || ||||| | Sbjct 29167 TCATGATGGAAAATATCCATTCCGAGACATACTCC---CTCCTCATCGACACCTACATCA 29223 Query 25763 CAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGA 25822 |||| | ||| | || || |||| |||| | || ||| ||| | ||||| Sbjct 29224 AAGACCCAGTGGAGCGCGAATATCTTTTTGATGCCGTTGAAACCATTCCCTGTATCAAAC 29283 Query 25823 GGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGC 25882 ||||||| |||||| |||||||||| | | | ||| | || |||| ||||| | Sbjct 29284 GGAAGGCAGACTGGGCCTTGAAGTGGATATCCGACAAAAGCTCCACTTTTGCAGAGCGTC 29343 Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| || ||||| ||||| || || || || ||| || ||||||||| ||||||| | Sbjct 29344 TGGTCGCGTTTGCCGCTGTTGAAGGGATTTTCTTCTCGGGCTCGTTTGCGTCCATCTTTT 29403 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 || | || || || |||||||| || |||||| ||||| |||||||||||| | Sbjct 29404 GGATGAAAAAGCGAGGCCTGATGCCCGGCCT-TACTTTCTCCAATGAGCTCATCAGCCGC 29462 Query 26002 GACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 || ||||| | |||| || ||||| ||||| || Sbjct 29463 GATGAGGGGATGCACACCGACTTTGCTTGCCTCCT 29497 >seq204124 Length=22413 Score = 158 bits (174), Expect = 2e-33 Identities = 390/584 (67%), Gaps = 16/584 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| ||||||| ||||| ||| || || ||||| || || || || || || Sbjct 6137 ATATGGCAGATGTATAAGAAAGCTGAAGCTTCGTTTTGGACTGCAGAGGAAATGGACTTG 6196 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATC-CAAAGAC---GAGCAGCATTTTCTCAA 25592 | |||||| | ||| |||| || | | | ||| ||| || | || ||| | Sbjct 6197 TCGAAGGACCTTCACGACTGG-ACAAACAAACTCAACGACAACGAACGCCACTTTATTTC 6255 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| || || || || || || ||||| || || || |||||||||||| |||| | Sbjct 6256 TCACGTTTTAGCCTTTTTCGCCGCTTCTGACGGGATTGTCAACGAGAATCTGGTCGAGCG 6315 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||| | | ||||| || | ||||| ||||||||| || ||||| || || Sbjct 6316 CTTCTCAAACGAAGTTCAAGCTGCCGAGGCACGGTGTTTCTATGGCTTCCAAATCATGAT 6375 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 ||||| | || || ||| || | ||| || || |||||||| | ||| Sbjct 6376 GGAAAACATCCATTCGGAGACATACTC---GCTCCTCATCGATACGTACATCAAGGACCC 6432 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 ||||| | || || |||| || ||||| ||| || ||||||| | ||||| Sbjct 6433 AGCCGAACGCGAGTACCTCTTTGACGCTGTCGAGACCATCCCATGCATCAAACGCAAGGC 6492 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAG-CGCTACGTTTGGCGAGCGGCTGGTAG 25888 ||||| | || ||||| | | | || || | | || || || || || || || | Sbjct 6493 CGACTGGGCACTCAATTGGAT-ATCCGACAAAGACTCGACATTCGGAGAACGTCTCGTCG 6551 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCA 25948 | || || ||||| ||||||||||| || ||| || |||||| | || |||||| | | Sbjct 6552 CTTTCGCCGCTGTTGAGGGCATCTTCTTTTCCGGATCTTTTGCGTCTATTTTCTGGATGA 6611 Query 25949 AGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 || || || ||||| || || ||||||||||||| | |||||| ||||||| | Sbjct 6612 AGAAGCGTGGTTTGATGCCAGGTCTTACCTTTTCCAACGAGTTGATCAGCCGGGACGAAG 6671 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052 | | |||| |||||||| || ||||| | || |||||||| Sbjct 6672 GCATGCACACGGATTTTGCTTGTCTGCTTTTCA---GCCACTTG 6712 >seq203715 Length=28578 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 222092 TCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGC 222151 |||||| ||| | ||||| | ||||||||| || ||||| ||||| ||||||||||| Sbjct 22982 TCCTCCTTGCCATGATTTTTGCGCAGATCCAAGAAGTCAAAGATGTCGGCGTGCCACGGT 22923 Query 222152 TCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 || | |||| || | ||| || || || ||||||||||| ||||| || Sbjct 22922 TCGATGTAGATAGCAAAAGCACCCGGACGTTTGTTGCCACCTTGATCAAC 22873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926470347595520