Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq204495 105 4e-17 seq203767 87.8 1e-11 >seq204495 Length=136544 Score = 105 bits (116), Expect = 4e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || || ||||| || || || | ||| || || | ||||| Sbjct 14679 ACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGT 14738 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || || || ||||| || || ||||| || | ||||| ||||| |||||||| || Sbjct 14739 TCGTCCGTCCTCGAGTTGTTTGCCGGCAAAGATCAAGCGTTGCTGATCGGGAGGAATGCC 14798 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||||||| |||||| ||| || || |||||||| | || | | | ||| Sbjct 14799 TTCCTTGTCTTGGATCTTTGCTTTCACGTTGTCGATAGTATCGGATGATTCGACCTCCAA 14858 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || |||||||| ||||| ||||||||||| Sbjct 14859 -CGTGATGGTCTTCCCGGTGAGCGTCTTCACGAAAATTTG 14897 >seq203767 Length=53171 Score = 87.8 bits (96), Expect = 1e-11 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 476000 GATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGAT 476059 ||||||||| | ||||| |||||| ||||||| |||||| | | |||| ||||| Sbjct 49998 GATAATCAACCCACTGTCCTTATCCAAGTCTTTGAGGGTGAACGGTCACTCACAAAAGAC 50057 Query 476060 AATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCT 476119 || ||| | || | || | || ||| || || || || || | || |||||| Sbjct 50058 AACAACCTTTTGGGCAAGTTCGAACTCACAGGCATCCCCCCGGCACCGCGCGGCGTTCCT 50117 Query 476120 CAAATTGAAGTTACTTTTGATATTGATGCAAATGGTAT 476157 || || |||||||||||||| ||||| || |||||||| Sbjct 50118 CAGATCGAAGTTACTTTTGAAATTGACGCCAATGGTAT 50155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3259406859607184