Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq204124 131 2e-24 seq201019 113 5e-19 >seq204124 Length=22413 Score = 131 bits (144), Expect = 2e-24 Identities = 205/289 (71%), Gaps = 11/289 (4%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||||||| |||||| ||||| || || ||||| | || |||||| Sbjct 6672 CCTTCGTCCCGGCTGATCAACTCGTTGGAAAAGGTAAGACCTGGCATCAAACCACGCTTC 6613 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || | ||| || || | |||| || | || || || ||||||||||| || ||||| || Sbjct 6612 TTCATCCAGAAAATAGACGCAAAAGAT-CCGGAAAAGAAGATGCCCTCAACAGCGGCGAA 6554 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG---ATCCACTTCATCGC 869355 ||| ||| || || | || ||||||| || |||| | ||||| || | || Sbjct 6553 AGCGACGAGACGTTCTCCGAA--TGTCGAG----TCTTTGTCGGATATCCAATTGAGTGC 6500 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 869415 |||||||||||| | | | || | || |||| ||| |||||||| || Sbjct 6499 CCAGTCGGCCTTGCGTTTGATGCATGGGATGGTCTCGACAGCGTCAAAGAGGTACTCGCG 6440 Query 869416 TTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 |||||| |||||||||| || || ||||| |||||||| || |||||| Sbjct 6439 TTCGGCTGGGTCCTTGATGTACGTATCGATGAGGAGCGAGTATGTCTCC 6391 Score = 120 bits (132), Expect = 4e-21 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||||| ||| || ||||||| ||||||||||||||||||||| | |||||| ||| Sbjct 7051 GCCTTGGAGTAATCCGACACGCGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGCGATATC 6992 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||| | ||||| |||| || || || || ||| || | ||| | Sbjct 6991 ATATCCATAAAATCAAACGGATTGGTCGAATTATACACTTTATCGTTGCCCAACGAGACC 6932 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 |||||||| || || |||||||| ||||| |||||||||||| ||||||||||| || Sbjct 6931 AGCAGGCGATCAGCTACAAACTCAATGTATTGGCACATGAGGGTCGCGTTCATGCCAAT 6873 >seq201019 Length=96896 Score = 113 bits (124), Expect = 5e-19 Identities = 205/291 (70%), Gaps = 17/291 (6%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || || ||||| ||||| | || ||| || | ||||||||||| ||||| ||||| Sbjct 29470 CCCTCATCGCGGCTGATGAGCTCATTGGAGAAAGTAAGGCCGGGCATCAGGCCTCGCTTT 29411 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || | ||||||||||| |||| || ||||||||| || || || || || |||||||| Sbjct 29410 TTCATCCAAAAGATGGACGCA-AACGAGCCCGAGAAGAAAATCCCTTCAACAGCGGCAAA 29352 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG---ATCCACTTCATCGC 869355 ||| || ||||| ||||| ||| ||| || |||| | |||||||||| || Sbjct 29351 CGCGACCAGACGCTCTGCAAAAGTG--GAG---CT-TTTGTCGGATATCCACTTCAAGGC 29298 Query 869356 CCAGTCGGCCTT---TTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC 869412 |||||| ||||| ||| | || | || | || || | ||| ||| || | || Sbjct 29297 CCAGTCTGCCTTCCGTTTGAT-AC--AGGGAATGGTTTCAACGGCATCAAAAAGATATTC 29241 Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || | ||||| |||| ||||||||||| ||||| || || ||||| Sbjct 29240 GCGCTCCACTGGGTCTTTGATGTAGGTGTCGATGAGGAGGGAGTATGTCTC 29190 Score = 93.3 bits (102), Expect = 5e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 868718 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGC 868777 ||||||||||| || ||||| | ||||||||||| ||||| | ||| ||||| | Sbjct 29812 TCGAAAAAGTTCGTTTTGCCTTGGAGCGAGATCATGTCCATGAAGTCGAAGGGGTTCGTT 29753 Query 868778 GTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATG 868837 | || ||| ||| || ||| |||||| | | || ||||| |||||||| || ||| Sbjct 29752 GAGTTATAGACCTTGTCATTTCCAAGCGACACCAAAAGACGGTCTGCGACAAATTCAATG 29693 Query 868838 TACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGG 868881 || |||||||| | | || |||||||| || ||| ||| || Sbjct 29692 TATTGGCACATCAAGGTCGCATTCATGCCAATCAGCTTCACTGG 29649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6090356315809036