Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq201019 187 4e-41 seq204124 159 5e-33 seq204477 86.0 1e-10 >seq201019 Length=96896 Score = 187 bits (206), Expect = 4e-41 Identities = 249/334 (75%), Gaps = 19/334 (6%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCT-AAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 || || ||||| ||||| | || ||| |||| | ||||||||||| ||||| ||||| Sbjct 29470 CCCTCATCGCGGCTGATGAGCTCATTGGAGAAAGTA-AGGCCGGGCATCAGGCCTCGCTT 29412 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACT-GCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 || | ||||||||||| || |||| ||||||||| || || || || || ||||||| Sbjct 29411 TTTCATCCAAAAGATGG-ACGCAAACGAGCCCGAGAAGAAAATCCCTTCAACAGCGGCAA 29353 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTG---ATCCACTTCATCG 794515 | |||| || ||||| ||||||||| || || ||||| | |||||||||| | Sbjct 29352 ACGCGACCAGACGCTCTGCAAAAGTGG--AG---CT-TTTGTCGGATATCCACTTCAAGG 29299 Query 794516 CCCACTCTGCCTT---TTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGT 794572 |||| |||||||| ||| | || |||| | || || | ||| ||| || | | Sbjct 29298 CCCAGTCTGCCTTCCGTTTGAT-AC--AGGGAATGGTTTCAACGGCATCAAAAAGATATT 29242 Query 794573 CCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGA 794632 | ||| || ||||| |||| |||||||||||||||||| ||||| ||||| || |||| Sbjct 29241 CGCGCTCCACTGGGTCTTTGATGTAGGTGTCGATGAGGAGGGAGTATGTCTCGGAATGGA 29182 Query 794633 TGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | ||||| || ||||||||||||||| ||||| Sbjct 29181 TATTTTCCATCATGATCTGGAAGCCATAGAAGCA 29148 Score = 89.7 bits (98), Expect = 8e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 793926 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCC 793985 ||||||||||| || ||||| | ||||||||||| ||||| | ||| ||||| | Sbjct 29812 TCGAAAAAGTTCGTTTTGCCTTGGAGCGAGATCATGTCCATGAAGTCGAAGGGGTTCGTT 29753 Query 793986 GTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATG 794045 | ||| ||| || || |||||| | | || ||||| ||||| ||||||||| Sbjct 29752 GAGTTATAGACCTTGTCATTTCCAAGCGACACCAAAAGACGGTCTGCGACAAATTCAATG 29693 Query 794046 TACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGG 794089 || |||||||| | || || |||||||| || ||| ||| || Sbjct 29692 TATTGGCACATCAAGGTCGCATTCATGCCAATCAGCTTCACTGG 29649 >seq204124 Length=22413 Score = 159 bits (176), Expect = 5e-33 Identities = 236/330 (72%), Gaps = 11/330 (3%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || |||||||| |||||| |||| || || ||||| | || |||||| Sbjct 6672 CCTTCGTCCCGGCTGATCAACTCGTTGGAAAAGGTAAGACCTGGCATCAAACCACGCTTC 6613 Query 794401 TTGAGCCAAAAGATGG-CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 || | ||| || || | | || || | || || || ||||||||||| || ||||| || Sbjct 6612 TTCATCCAGAAAATAGACGCAAAAGAT-CCGGAAAAGAAGATGCCCTCAACAGCGGCGAA 6554 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTG---ATCCACTTCATCGC 794516 ||||||| || || | || |||| || ||||||| | ||||| || | || Sbjct 6553 AGCGACGAGACGTTCTCCGAA--TGTCGAG----TCTTTGTCGGATATCCAATTGAGTGC 6500 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 ||| || ||||| | | | || | || |||| ||| |||||||| || Sbjct 6499 CCAGTCGGCCTTGCGTTTGATGCATGGGATGGTCTCGACAGCGTCAAAGAGGTACTCGCG 6440 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 ||| | |||||||||| ||| || ||||||||||||||||| ||||| || |||||||| Sbjct 6439 TTCGGCTGGGTCCTTGATGTACGTATCGATGAGGAGCGAGTATGTCTCCGAATGGATGTT 6380 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| || ||| ||||||||||| || || Sbjct 6379 TTCCATCATGATTTGGAAGCCATAGAAACA 6350 Score = 107 bits (118), Expect = 3e-17 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 793896 CCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAG 793955 || ||||||| || || ||||||| ||||||||||||||||||||| | |||||| Sbjct 7054 CCAGCCTTGGAGTAATCCGACACGCGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGCGAT 6995 Query 793956 ATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGAC 794015 |||| ||||| | ||||| |||| || || || ||| || | ||| Sbjct 6994 ATCATATCCATAAAATCAAACGGATTGGTCGAATTATACACTTTATCGTTGCCCAACGAG 6935 Query 794016 GCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCG 794075 | |||||||| || || || || |||||||| ||||||||||||| ||||||||||| Sbjct 6934 ACCAGCAGGCGATCAGCTACAAACTCAATGTATTGGCACATGAGGGTCGCGTTCATGCCA 6875 Query 794076 AT 794077 || Sbjct 6874 AT 6873 >seq204477 Length=26847 Score = 86.0 bits (94), Expect = 1e-10 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1485603 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGA 1485662 |||||| ||| ||||||| |||| || ||||| ||||| || || | ||| | ||| | Sbjct 4274 GGCCTCAGTGGCGATGCGCTCGAAAATATCGTTCACAAAAGAATTGAGGATAGCCATAGC 4215 Query 1485663 TTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||| ||||| ||| ||| || ||||| ||||||||||| Sbjct 4214 TTTGTTTGAGATACCCGTGTCAGGATGCACTTGCTTGAGCAC 4173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7894491951279012