Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq204495 87.8 2e-12 seq201019 84.2 2e-11 >seq204495 Length=136544 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 137256 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 137315 ||| ||||||||||| || ||| |||||| ||||||||||||||||| |||||||| || Sbjct 14745 GTCCTCGAGTTGTTTGCCGGCAAAGATCAAGCGTTGCTGATCGGGAGGAATGCCTTCCTT 14804 Query 137316 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 ||| || ||| ||| | | || | || || | | ||| || || | || | Sbjct 14805 GTCTTGGATCTTTGCTTTCACGTTGTCGATAGTATCGGATGATTCGACCTCCAACGTGAT 14864 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| ||||| | || || ||||| |||||||| Sbjct 14865 GGTCTTCCCGGTGAGCGTCTTCACGAAAATTTGCAT 14900 >seq201019 Length=96896 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 50232 AAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaaCTTACTTTGGCCGAACGTTTA 50291 |||| || ||||| ||||| |||| |||||| ||||| || || ||| | Sbjct 29286 AAGGCAGACTGGGCCTTGAAGTGGATATCCGACAAAAGCTCCACTTTTGCAGAGCGTCTG 29345 Query 50292 GTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATTTTAC 50351 || ||||||||| |||||||| | || || || || ||||| |||| |||| Sbjct 29346 GTCGCGTTTGCCGCTGTTGAAGGGATTTTCTTCTCGGGCTCGTTTGCGTCCATCTTTTGG 29405 Query 50352 ATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGAC 50411 || |||| |||| | ||||||||||| || || ||| ||| | || ||||| Sbjct 29406 ATGAAAAAGCGAGGCCTGATGCCCGGCCTTACTTTCTCCAATGAGCTCATCAGCCGCGAT 29465 Query 50412 GAAGGAATGCACACAGACTTTGCGTG 50437 || || |||||||| |||||||| || Sbjct 29466 GAGGGGATGCACACCGACTTTGCTTG 29491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 487295110545600