Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq204495 150 4e-31 seq203452 95.1 2e-14 >seq204495 Length=136544 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| ||||| || || ||||| ||||| || || || ||| ||| || Sbjct 14685 ACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTTCGTCC 14744 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || |||||||| || |||||||| | | ||| ||||| ||||| || |||||||| Sbjct 14745 GTCCTCGAGTTGTTTGCCGGCAAAGATCAAGCGTTGCTGATCGGGAGGAATGCCTTCCTT 14804 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||||||||| || || || || ||||| | ||| || ||||| || || Sbjct 14805 GTCTTGGATCTTTGCTTTCACGTTGTCGATAGTATCGGATGATTCGACCTCCAACGTGAT 14864 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | |||||| || || || ||||| Sbjct 14865 GGTCTTCCCGGTGAGCGTCTTCACGAAAATTTGCAT 14900 Score = 104 bits (114), Expect = 5e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || |||||||| || | || ||||| || || || || ||||| Sbjct 14518 TCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTG 14577 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || || || || || | ||||| ||||| || || Sbjct 14578 TCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGACGACTCTACCTCCAAGGTGATG 14637 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||||||||||||| ||||| |||||||| Sbjct 14638 GTCTTGCCTGTCAACGTCTTCACAAAAATCTGCAT 14672 >seq203452 Length=5053 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||| ||||||| || ||||| || || |||||||| || | ||| || ||| | || Sbjct 652 GTGAAGAGTAGCCTCCTTCTGAATGTTGTAATCAGAGAGCGTCTTACTGTTTTCATGCTG 711 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 |||||||||||||| || | || ||| | || || || || || || ||||| ||||| Sbjct 712 CTTTCCAGCAAAGATAAGGCGCTGCTGACCAGG-GGCATGCCGTCTTTGTCTTGGATCTT 770 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 ||||| ||||| || || || || | || || ||||| || || | ||| ||| | Sbjct 771 CGCTTTGACATTGTCGATGGTGTCTGATGACTCCACGTCCAACGTGATGGCCTT-CCTAT 829 Query 82787 CAACGTCTT 82795 ||||| ||| Sbjct 830 CAACGCCTT 838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979254558688212