Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq201019 107 2e-18 seq204495 100 3e-16 seq204124 98.7 1e-15 >seq201019 Length=96896 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| |||||||| ||||||| ||||| ||||| || ||||| ||| || || Sbjct 29494 AGGCAAGCAAAGTCGGTGTGCATCCCCTCATCGCGGCTGATGAGCTCATTGGAGAAAGTA 29435 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 ||||||||||| | |||| | | || || | || |||| ||||| |||||| ||| Sbjct 29434 AGGCCGGGCATCAGGCCTCGCTTTTTCATCCAAAAGATGGACGCAAACGAGCCCGAGAAG 29375 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819 || | || || || |||||| ||||||| ||||| || || || | | ||| | Sbjct 29374 AAAATCCCTTCAACAGCGGCAAACGCGACCAGACGCTCTGCAAAAGTGGAGCTTTTGTCG 29315 Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTT 120848 |||||||||| |||||| || ||||| Sbjct 29314 GATATCCACTTCAAGGCCCAGTCTGCCTT 29286 >seq204495 Length=136544 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| || | || || |||||||| ||||| || ||||| |||||| Sbjct 14518 TCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTG 14577 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | || | ||||| | | ||| || || | ||||| | Sbjct 14578 TCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGACGACTCTACCTCCAAGGTGATG 14637 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| |||| || || || ||||||||||| Sbjct 14638 GTCTTGCCTGTCAACGTCTTCACAAAAATCTGCAT 14672 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| |||||||| ||| | || ||||||||| || ||||| Sbjct 14704 GTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTTCGTCCGTCCTCGAGTTGTTTGCCG 14763 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || ||||| |||||||| |||||||||||||| ||||||| || Sbjct 14764 GCAAAGATCAAGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGGATCTTTGCTTTC 14823 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | || |||| | || || || | |||| ||| || ||||| || || Sbjct 14824 ACGTTGTCGATAGTATCGGATGATTCGACCTCCAACGTGATGGTCTTCCCGGTGAGCGTC 14883 Query 133644 TTTACGAAAATCTGCATGGCT 133664 || |||||||| |||||| || Sbjct 14884 TTCACGAAAATTTGCATGCCT 14904 >seq204124 Length=22413 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 120364 ACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAAC 120423 ||||| ||||| |||||||| || ||||| | | ||| || | | |||||| || ||| Sbjct 7033 ACGCGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGCGATATCATATCCATAAAATCAAAC 6974 Query 120424 GGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACA 120483 || ||| ||| ||| | ||| | ||||||| || ||||| || || |||||| Sbjct 6973 GGATTGGTCGAATTATACACTTTATCGTTGCCCAACGAGACCAGCAGGCGATCAGCTACA 6914 Query 120484 AACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAA 120527 ||||||||||| | ||||||| |||||||||||| | ||| Sbjct 6913 AACTCAATGTATTGGCACATGAGGGTCGCGTTCATGCCAATCAA 6870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482185007237920