Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq204124 140 4e-28 >seq204124 Length=22413 Score = 140 bits (154), Expect = 4e-28 Identities = 354/537 (66%), Gaps = 6/537 (1%) Strand=Plus/Minus Query 39637 GCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTT 39696 ||| || || | || || || ||||| ||||| || || || ||||| | ||||||||| Sbjct 6673 GCCTTCGTCCCGGCTGATCAACTCGTTGGAAAAGGTAAGACCTGGCATCAAACCACGCTT 6614 Query 39697 TTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAA 39756 || | ||| || || | ||||||||||| |||||||||||||| || || || || || Sbjct 6613 CTTCATCCAGAAAATAGACGCAAAAGATCCGGAAAAGAAGATGCCCTCAACAGCGGCGAA 6554 Query 39757 TGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATCCACTTCTGTGCCCAATC 39813 || || || | |||||| | | | || || | |||||| || ||||||| || Sbjct 6553 AGCGACGAGACGTTCTCCGAATGTCGAGTCTTTGTCGGATATCCAATTGAGTGCCCAGTC 6494 Query 39814 AGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATC 39873 || || || | || || || || || | ||| | |||||| || | ||| | Sbjct 6493 GGCCTTGCGTTTGATGCATGGGATGGTCTCGACAGCGTCAAAGAGGTACTCGCGTTCGGC 6434 Query 39874 ACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAAT 39933 || || | || ||||| || | || || | || |||||||||||||| || Sbjct 6433 TGGGTCCTTGATGTACGTATCGATGAGGAGCGAGTATGTCTCCGAATGGATGTTTTCCAT 6374 Query 39934 CGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCT 39993 | || || || || || ||||| | ||| || | | ||| || || | || | Sbjct 6373 CATGATTTGGAAGCCATAGAAACACCGTGCCTCGGCAGCTTGAACTTCGTTTGAGAAGCG 6314 Query 39994 TTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTT 40053 || ||| ||| || || || || || ||| |||||| ||||| || || || || Sbjct 6313 CTCGACCAGATTCTCGTTGACAATCCCGTCAGAAGCGGCGAAAAAGGCTAAAACGTGAGA 6254 Query 40054 AATAAAATATTTTTCATCGGGTGTCAATTTAT---TCCAGTCATTGATATCTTTTGATAT 40110 |||||| | ||| | | | | ||| | ||||||| | | || || || | Sbjct 6253 AATAAAGTGGCGTTCGTTGTCGTTGAGTTTGTTTGTCCAGTCGTGAAGGTCCTTCGACAA 6194 Query 40111 ATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATAT 40167 || | ||| || || ||||||||||| || || || || || ||||| | |||||| Sbjct 6193 GTCCATTTCCTCTGCAGTCCAAAACGAAGCTTCAGCTTTCTTATACATCTGCCATAT 6137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685152820689120