Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq204495 147 7e-30 seq204304 134 4e-26 seq203754 96.9 1e-14 seq203452 93.3 1e-13 seq203767 87.8 5e-12 >seq204495 Length=136544 Score = 147 bits (162), Expect = 7e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | | || || || |||||||| ||||| || || ||||| || || Sbjct 14670 CATCCCGCCACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTC 14729 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || || || |||||||| || |||||||| | ||||||||||| || Sbjct 14730 GGAAAGAGTTCGTCCGTCCTCGAGTTGTTTGCCGGCAAAGATCAAGCGTTGCTGATCGGG 14789 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || || || || || ||||| || || || || | ||| |||| ||| Sbjct 14790 AGGAATGCCTTCCTTGTCTTGGATCTTTGCTTTCACGTTGTCGATAGTATCGGATGATTC 14849 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | || | ||||| ||||| || || || || ||||| ||||| Sbjct 14850 GACCTCCAACGTGATGGTCTTCCCGGTGAGCGTCTTCACGAAAATTTGCAT 14900 Score = 104 bits (114), Expect = 7e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| || ||||| | | || ||||||||||| || ||||| |||||||| |||| Sbjct 14894 TTTGCATGCCTCCACGGAGACGCAGGACAAGATGAAGGGTGGACTCCTTTTGAATGTTAT 14953 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || |||||||| ||||| || || || || || |||||||| |||| Sbjct 14954 AGTCCGAGAGCGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAAATAAGACGTTGTTGAT 15013 Query 140623 CAGGAGGAATTC 140634 | ||||| |||| Sbjct 15014 CGGGAGGGATTC 15025 >seq204304 Length=128263 Score = 134 bits (148), Expect = 4e-26 Identities = 271/399 (68%), Gaps = 6/399 (2%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 |||||||||||||| || ||||| | | || ||||| || | || ||| | || | Sbjct 51777 CCCGAAGAAATTTCTTCCATGGTCCTCTTGAAGATGAAAGAGACGGCCGAATCTTACCTT 51718 Query 349592 GGTGAAAC---AGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAG 349648 | ||| | | |||| | || || | || || || || || || || || |||| Sbjct 51717 G--GAACCCCGATTAAC-AACGCCGTCGTCACCGTTCCCGCTTACTTCAACGACTCCCAA 51661 Query 349649 CGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAAT 349708 || |||||||| |||||||| | ||| | || | || || || | || || || Sbjct 51660 CGGCAGGCAACAAAGGATGCTGGTACCATCTCTGGCATGAACGTCCTCCGTATCATCAAC 51601 Query 349709 GAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaT 349768 || || ||||| || || |||||||| || ||||| || | | || ||| ||| Sbjct 51600 GAGCCTACTGCCGCCGCCATTGCATACGGTCTTGACAAGAAGGTTGTGGGAGAGCGCAAT 51541 Query 349769 ATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAG 349828 | | || || ||| | || || || || || ||||| || || || ||| | ||||| Sbjct 51540 GTGTTGATCTTCGATCTCGGAGGAGGCACGTTCGATGTTTCGCTTCTCACAATCGAAGAA 51481 Query 349829 GGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 || ||||| ||||| || || || || || || |||||| | || || || ||||| || Sbjct 51480 GGCATTTTCGAAGTCAAGGCCACCGCAGGAGACACACATTTGGGCGGCGAGGATTTCGAC 51421 Query 349889 AATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGT 349927 || |||||||| || |||||| |||| || |||||| Sbjct 51420 AACCGTCTCGTGAACCACTTTGTTCAAGAGTTCAAGCGT 51382 Score = 87.8 bits (96), Expect = 5e-12 Identities = 190/283 (67%), Gaps = 1/283 (0%) Strand=Plus/Minus Query 350373 TAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTA 350432 |||||| |||| | | | || | ||||| | || | ||| ||||| | ||| || | Sbjct 50830 TAACTC-ACTTCCTCCTAGAATTGAAACCGCCGGAGGAGTGATGACCGCTCTCATCAAGA 50772 Query 350433 GAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGC 350492 | |||| || || || || |||||||| ||| ||||| || | | | || || || | Sbjct 50771 GGAATACCACCGTTCCCACGAAAAAGTCTGAAATATTTTCGACGTATTCCGACAACCAAC 50712 Query 350493 CAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAAC 350552 | | || || || || | |||||||||||||| ||||| || || || || || Sbjct 50711 CTGGTGTTTTGATCCAGGTTTACGAAGGTGAACGTGCGCGCACGAAGGACAACAACCTAC 50652 Query 350553 TTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAG 350612 |||| | ||| || | ||||| || ||| |||| |||||||| |||| | Sbjct 50651 TTGGGAAGTTTGAGCTTTCGGGCATTCCTCCCGCCCCTCGAGGTGTTCCTCAAGTTGAGG 50592 Query 350613 TCTCTTTCGATATTGATTCAAATGGTATTTTAAATGTTACCGC 350655 | ||||||| || ||| | || || ||| | ||||| |||| Sbjct 50591 TGACTTTCGACATCGATGCGAACGGCATTCTCAATGTATCCGC 50549 >seq203754 Length=64599 Score = 96.9 bits (106), Expect = 1e-14 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 140525 TAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATC 140584 ||| || ||||||||||| |||||||||||||| ||||| || |||||||| ||||| Sbjct 452 TAGGACGAGATGAAGAGTCGACTCTTTTTGAATGTTATAGTCGCTCAATGTTCGGCCATC 393 Query 140585 TTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAAT 140632 ||||| |||||||| || || || ||||| || || || || || || Sbjct 392 CTCAAGCTGTTTTCCCGCGAAAATGAGACGCTGTTGGTCCGGGGGGAT 345 >seq203452 Length=5053 Score = 93.3 bits (102), Expect = 1e-13 Identities = 112/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 || |||||||||| ||| || ||||| || |||||||| | || | | |||| | Sbjct 650 AGGTGAAGAGTAGCCTCCTTCTGAATGTTGTAATCAGAGAGCGTCTTACTGTTTTCATGC 709 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || |||||||||||||| || || |||||| |||| || || || ||||| || || || Sbjct 710 TGCTTTCCAGCAAAGATAAGGCGCTGCTGACCAGG-GGCATGCCGTCTTTGTCTTGGATC 768 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATG 140682 || ||||| ||||| || || | || |||| Sbjct 769 TTCGCTTTGACATTGTCGATGGTGTCTGATG 799 >seq203767 Length=53171 Score = 87.8 bits (96), Expect = 5e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 350186 GTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTT 350245 || ||| | ||||| ||||| || ||||| || || || ||||| | || || | | Sbjct 49653 GTTGTTCTTGTTGGAGGTTCAACCCGTATCCCCAAGGTCCAACAACTGCTCAAGGATTAT 49712 Query 350246 TTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCT 350305 || ||||||||| ||||| | ||||||||| |||||||||||||| || ||||| Sbjct 49713 TTCGGTGGCAAAGAGCCTTCGAAGGGAATTAATCCCGATGAAGCTGTTGCCTACGGTGCC 49772 Query 350306 GCTGTTCA 350313 |||||||| Sbjct 49773 GCTGTTCA 49780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1511284041399924