Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq201019 156 5e-33 seq204124 98.7 1e-15 >seq201019 Length=96896 Score = 156 bits (172), Expect = 5e-33 Identities = 360/531 (68%), Gaps = 16/531 (3%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| ||||||||| | ||| |||||| ||| ||||||||| ||||| | |||| Sbjct 28945 TGTACAAGAAAGCGGAGGCTTCGTTCTGGACCGCCGAGGAGATGGACCTTTCAAAGGACC 29004 Query 59653 TGAAGGATTGGGACAAGC---TCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGG 59709 | | || ||| |||| | | || || |||||| |||||||||| || || | Sbjct 29005 TTCACGACTGGAACAATCGTTTAAACGACAACGAGCGGCATTTCATCTCCCACGTTCTCG 29064 Query 59710 CCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCC--AA 59767 ||||||| |||||| || || || || | || || | | |||| |||| || Sbjct 29065 CCTTCTTTGCGGCGTCCGACGGCATAGTCAACGAGAACTTGGTA--GAACGTTTCTCTAA 29122 Query 59768 GGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTAT 59827 || || || |||||||||||||| ||||| | | ||| | | || ||| Sbjct 29123 TGAAGTTCAAGCTGCCGAGGCCCGGTGCTTCTATGGCTTCCAGATCATGATGGAAAATAT 29182 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 ||| |||||||| ||||| ||| | ||||| | | |||| || || | ||| | Sbjct 29183 CCATTCCGAGACATACTCCCTCCTCATCGACACCTACATCAAAGACCCAGTGGAGCGCGA 29242 Query 59888 TGGTCTGTTCCGTGCCATAGAGA-CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCA 59946 ||| || |||| | || | | | ||| | | | |||| || ||||| |||||| Sbjct 29243 ATATCTTTTTGATGCCGTTGAAACCATTCCCTGTA-TCAAACGGAAGGCAGACTGGGCCT 29301 Query 59947 TGCAGTGGATGAGTC--CTGGAGCATCA--TTTGCACAACGTCTCATAGCTTTTGCATGC 60002 || ||||||| | | | ||| || |||||| | ||||| | || ||||| Sbjct 29302 TGAAGTGGAT-ATCCGACAAAAGCTCCACTTTTGCAGAGCGTCTGGTCGCGTTTGCCGCT 29360 Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGCTCAAAAAGCGTGG 60061 || ||||| || |||||||| |||||||| || | | || || ||| | |||||||| || Sbjct 29361 GTTGAAGGGATTTTCTTCTCGGGCTCGTT-TGCGTCCATCTTTTGGATGAAAAAGCGAGG 29419 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 ||| ||||| ||||| | ||||||||| ||||| || ||| || ||||| Sbjct 29420 CCTGATGCCCGGCCTTACTTTCTCCAATGAGCTCATCAGCCGCGATGAGGG 29470 >seq204124 Length=22413 Score = 98.7 bits (108), Expect = 1e-15 Identities = 359/549 (65%), Gaps = 16/549 (3%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAG-AC 59651 ||||||||||||| | ||| || ||| | | ||||| || ||| | | || || || Sbjct 6147 TGTATAAGAAAGCTGAAGCTTCGTTTTGGACTGCAGAGGAAATGGACTT-GTCGAAGGAC 6205 Query 59652 CTGAAGGATTGGG---ACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTG 59708 || | || ||| |||| ||||| || |||| | || || || || | Sbjct 6206 CTTCACGACTGGACAAACAAACTCAACGACAACGAACGCCACTTTATTTCTCACGTTTTA 6265 Query 59709 GCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAG 59768 ||||| ||||| || ||| || ||||| | || ||| | | | | ||| || || Sbjct 6266 GCCTTTTTCGCCGCTTCTGACGGGATTGTCAACGAGAATCTGGTCGAGCGCTTCTCAAAC 6325 Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATC 59828 || || || ||||||||| |||| ||||| | | || | | || ||| Sbjct 6326 GAAGTTCAAGCTGCCGAGGCACGGTGTTTCTATGGCTTCCAAATCATGATGGAAAACATC 6385 Query 59829 CACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCT 59888 || || ||||| ||||||||| | ||||||| || ||||||| || | || | || Sbjct 6386 CATTCGGAGACATACTCGCTCCTCATCGATACGTACATCAAGGACCCAGCCGA--ACGCG 6443 Query 59889 GGT--CTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCC 59945 || || || || | ||||| |||| ||| | |||| || || || ||||| Sbjct 6444 AGTACCTCTTTGACGCTGTCGAGACCATCCCATGCA-TCAAACGCAAGGCCGACTGGGCA 6502 Query 59946 ATGCAGTGGATGA--GTCCTGGAG-CATCATTTGCACAACGTCTCATAGCTTTTGCATGC 60002 | | ||||| | | || | |||| | | |||||||| | ||||| || Sbjct 6503 CTCAATTGGATATCCGACAAAGACTCGACATTCGGAGAACGTCTCGTCGCTTTCGCCGCT 6562 Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGCTCAAAAAGCGTGG 60061 || || || |||||||| || || || || || | ||||||||||| | || |||||||| Sbjct 6563 GTTGAGGGCATCTTCTTTTCCGGATCTTT-TGCGTCTATTTTCTGGATGAAGAAGCGTGG 6621 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCA 60121 | ||||| || || | || ||||||||| |||| ||||||||| ||| | || Sbjct 6622 TTTGATGCCAGGTCTTACCTTTTCCAACGAGTTGATCAGCCGGGACGAAGGCATGCACAC 6681 Query 60122 GGAGTTTGC 60130 ||| ||||| Sbjct 6682 GGATTTTGC 6690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547122578627520