Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq204495 149 7e-31 seq204124 102 9e-17 seq201019 98.7 1e-15 >seq204495 Length=136544 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || |||||||| ||||| ||||| || || | ||||| || ||| Sbjct 14900 ATGCAAATTTTCGTGAAGACGCTCACCGGGAAGACCATCACGTTGGAGGTCGAATCATCC 14841 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || |||| || || || || |||||||| || |||||||| || ||| Sbjct 14840 GATACTATCGACAACGTGAAAGCAAAGATCCAAGACAAGGAAGGCATTCCTCCCGATCAG 14781 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || ||||| || || ||||||||||| | || || || | ||||| ||| Sbjct 14780 CAACGCTTGATCTTTGCCGGCAAACAACTCGAGGACGGACGAACTCTTTCCGACTACAAT 14721 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||||||||| || ||| | ||||| || || || Sbjct 14720 ATCCAGAAGGAGTCCACTCTTCACCTCGTCCTCCGTCTCCGTGGCGG 14674 Score = 118 bits (130), Expect = 1e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| |||||| | || |||||||| || || | ||||| ||||| Sbjct 14672 ATGCAGATTTTTGTGAAGACGTTGACAGGCAAGACCATCACCTTGGAGGTAGAGTCGTCG 14613 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || |||||||||||||| ||||| || || ||| Sbjct 14612 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAG 14553 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 ||||| || || ||||| || ||||| |||||||| Sbjct 14552 CAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGA 14518 Score = 102 bits (112), Expect = 9e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 27509 GAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTA 27568 |||| ||||| || || || ||||| ||||| || || ||||||||||| |||| || | Sbjct 15025 GAATCCCTCCCGATCAACAACGTCTTATTTTCGCCGGCAAGCAACTCGAAGATGGACGCA 14966 Query 27569 CCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCG 27628 | || | |||||||| | |||||||| ||||| |||||||| ||| ||||||| || | Sbjct 14965 CGCTCTCGGACTATAACATTCAAAAGGAGTCCACCCTTCATCTTGTCCTGCGTCTCCGTG 14906 Query 27629 GTGG 27632 | || Sbjct 14905 GAGG 14902 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| ||||| || || || |||||| Sbjct 15183 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATTACCCTGGAAGTCGAGTCATCG 15124 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | || | || | ||||| |||||||||||||||||||| Sbjct 15123 GACACGATCGATAACGTCAAGGCGAAAATTCAGGACAAGGAGGG 15080 >seq204124 Length=22413 Score = 102 bits (112), Expect = 9e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 64717 CGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATT 64776 ||||||| ||||| ||| ||| || || || |||||||| || || || |||||| Sbjct 6542 CGTCTCGTCGCTTTCGCCGCTGTTGAGGGCATCTTCTTTTCCGGATCTTTTGCGTCTATT 6601 Query 64777 TTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCT 64836 |||||| | || ||||| || ||||||||||||| | ||||| |||||| ||||| Sbjct 6602 TTCTGGATGAAGAAGCGTGGTTTGATGCCAGGTCTTACCTTTTCCAACGAGTTGATCAGC 6661 Query 64837 CGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAG 64890 |||||||| || | ||| || ||||| | || ||||||||| | ||| Sbjct 6662 CGGGACGAAGGCATGCACACGGATTTTGCTTGTCTGCTTTTCAGCCACTTGAAG 6715 >seq201019 Length=96896 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 64715 AGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTA 64774 ||||||| | || |||||| ||| ||||| |||||||| || || || || || | Sbjct 29338 AGCGTCTGGTCGCGTTTGCCGCTGTTGAAGGGATTTTCTTCTCGGGCTCGTTTGCGTCCA 29397 Query 64775 TTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCT 64834 | || ||| | |||||||| ||||||||||| || || | || || || ||||| ||| Sbjct 29398 TCTTTTGGATGAAAAAGCGAGGCCTGATGCCCGGCCTTACTTTCTCCAATGAGCTCATCA 29457 Query 64835 CTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTAC--CCTGTTCAGCCACCTCAA 64889 || || |||||| | ||| || ||||| || | |||||||||||| ||||| Sbjct 29458 GCCGCGATGAGGGGATGCACACCGACTTTGC--TTGCCTCCTGTTCAGCCATCTCAA 29512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568852487008960