Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq204495 167 5e-36 seq203452 95.1 3e-14 >seq204495 Length=136544 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||||||||||||||| || ||||| || || || | ||| || | ||| || Sbjct 14689 AGGACGAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTTCGTCCGTCC 14748 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || ||||| || ||||| | |||||| || || ||||||| ||||||||||| Sbjct 14749 TCGAGTTGTTTGCCGGCAAAGATCAAGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCT 14808 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| ||||||||| ||||| || || || ||| ||||| | ||||| ||| Sbjct 14809 TGGATCTTTGCTTTCACGTTGTCGATAGTATCGGATGATTCGACCTCCAACGTGATGGTC 14868 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | ||||| Sbjct 14869 TTCCCGGTGAGCGTCTTCACGAAAATTTGCAT 14900 Score = 122 bits (134), Expect = 2e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 || || ||||||||||| || ||||||||||| || || || || |||| || |||||| Sbjct 14518 TCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTG 14577 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 ||||||||||| |||||||| ||||||||||| || || ||||| | ||||| Sbjct 14578 TCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGACGACTCTACCTCCAAGGTGATG 14637 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || | ||||| ||||| | |||||| Sbjct 14638 GTCTTGCCTGTCAACGTCTTCACAAAAATCTGCAT 14672 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || || ||||| |||||||| || || || |||||||| |||||| || |||||| Sbjct 15361 CCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCGATGGTATCAGAGGACTCGACCTCG 15420 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| |||||||| ||||||||||| ||||| | |||||| Sbjct 15421 AGGGTGATGGTCTTTCCGGTGAGAGTCTTAACAAAGATCTGCAT 15464 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| || || || || ||||| ||||||||||||||||||| | Sbjct 15187 TCCACGCAGACGAAGGACGAGATGGAGGGTCGACTCCTTTTGGATGTTATAATCCGATAA 15246 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 ||| | || || || || ||||| || |||||||| | ||||||||||| || || Sbjct 15247 GGTGCGACCGTCCTCAAGTTGCTTCCCGGCGAAGATCAAACGTTGTTGGTCCGGGGG 15303 >seq203452 Length=5053 Score = 95.1 bits (104), Expect = 3e-14 Identities = 111/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 ||||||||||| | ||| || || ||||| ||||| | || ||| | | | ||| || Sbjct 650 AGGTGAAGAGTAGCCTCCTTCTGAATGTTGTAATCAGAGAGCGTCTTACTGTTTTCATGC 709 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||||| || || ||||||||||| || || |||| || | || || ||||| |||||| Sbjct 710 TGCTTTCCAGCAAAGATAAGGCGCTGCTGACCAGG-GGCATGCCGTCTTTGTCTTGGATC 768 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGA 211057 || ||| || || ||||||||||| || Sbjct 769 TTCGCTTTGACATTGTCGATGGTGTCTGA 797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1156114721829420