Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq204495 143 6e-29 seq67697 125 2e-23 seq74316 102 2e-16 seq203452 95.1 3e-14 seq125736 89.7 1e-12 >seq204495 Length=136544 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| |||||||| || || |||| |||||| |||| | ||||| || || Sbjct 14689 AGGACGAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCGGAAAGAGTTCGTCCGTCC 14748 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || || ||||| | ||||| || ||||| ||||| |||||||||||| Sbjct 14749 TCGAGTTGTTTGCCGGCAAAGATCAAGCGTTGCTGATCGGGAGGAATGCCTTCCTTGTCT 14808 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||||| ||||| || || || | ||| || || |||||||| ||| Sbjct 14809 TGGATCTTTGCTTTCACGTTGTCGATAGTATCGGATGATTCGACCTCCAACGTGATGGTC 14868 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | ||| | |||||| Sbjct 14869 TTCCCGGTGAGCGTCTTCACGAAAATTTGCAT 14900 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 || || |||||||| || || |||||||| || || || ||||| ||||| || |||||| Sbjct 14518 TCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTG 14577 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 || |||||||| |||||| ||||||||||| || | || || || || ||||| Sbjct 14578 TCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGACGACTCTACCTCCAAGGTGATG 14637 Query 225679 GTCTTGCCCGTCAAAGTTTT 225698 |||||||| ||||| || || Sbjct 14638 GTCTTGCCTGTCAACGTCTT 14657 >seq67697 Length=943 Score = 125 bits (138), Expect = 2e-23 Identities = 138/184 (75%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 7542 TGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTT 7601 ||||||| |||| |||| || ||| || |||| || ||||| ||| |||| ||||| || Sbjct 548 TGGTAATGACCAAATTTATAATGTTGTTGTTACAGCTCATGCTTTTATTATAATTTTTTT 489 Query 7602 TTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGG 7661 | | ||||| || |||| || || || || ||||||||| | || || |||| | || Sbjct 488 TATAGTTATACCTATTATAATTGGAGGATTTGGAAATTGACTAGTACCCCTAATACTAGG 429 Query 7662 TGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC 7721 || || ||||| || || || | | || ||||||||||||||| ||||||| ||||| Sbjct 428 AGCCCCAGATATAGCATTCCCTCGAATAAATAATATAAGTTTTTGAATACTACCTCCTTC 369 Query 7722 CTTA 7725 ||| Sbjct 368 TTTA 365 >seq74316 Length=158 Score = 102 bits (112), Expect = 2e-16 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 370692 AGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCAAAAAAGCTAGTAT 370751 ||||||| ||||| || ||||||||||| ||||| |||| |||||| |||||||||||| Sbjct 134 AGAATAAGTGTTGGTATAGGATAGGATCACCTCCCCCTGCAGGATCATAAAAGCTAGTAT 75 Query 370752 TAAAATTTCTATCAGTTAAAA 370772 |||| |||||||| ||||||| Sbjct 74 TAAAGTTTCTATCTGTTAAAA 54 >seq203452 Length=5053 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/208 (71%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 ||||| ||||| | || || || | |||||||| | | || | | | ||| || Sbjct 650 AGGTGAAGAGTAGCCTCCTTCTGAATGTTGTAATCAGAGAGCGTCTTACTGTTTTCATGC 709 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| ||||| |||||||| || || || | || || || || || |||||||||||| Sbjct 710 TGCTTTCCAGCAAAGATAAGGCGCTGCTGACCAGG-GGCATGCCGTCTTTGTCTTGGATC 768 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || || ||| |||||||||||||| | |||||||| |||||||| | ||| || Sbjct 769 TTCGCTTTGACATTGTCGATGGTGTCTGATGACTCCACGTCCAACGTGATGGCCTT-CCT 827 Query 225688 GTCAAAGTTTTTATGAACA-CTTGCATT 225714 |||| | || |||| | ||||||| Sbjct 828 ATCAACGCCTTGGTGAAAATTTTGCATT 855 >seq125736 Length=125 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || ||||||||||| | ||| | |||| ||||||||| || | ||| | ||||| Sbjct 117 AAAGGTAATTTATGTAAAGACATACCATTAGTTCTCATATTTAAAGTAGTACTTATAAAA 58 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAA 371481 || | ||| |||| | |||||| ||||||||||| |||||||| || ||||||||| Sbjct 57 TTAACAGCACCTAATAAAGAAGAGATACCTGCAAGGTGTAAACTGAAGATTGCTAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1189406459688552