Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq204124 176 4e-39 >seq204124 Length=22413 Score = 176 bits (194), Expect = 4e-39 Identities = 371/550 (67%), Gaps = 5/550 (1%) Strand=Plus/Minus Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 ||| |||||||| |||| |||||||| | ||| |||| ||||| ||||| || | Sbjct 6694 ACAAGCAAAATCCGTGTGCATGCCTTCGTCCCGGCTGATCAACTCGTTGGAAAAGGTAAG 6635 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 || ||||| ||||| | ||| || | ||| || |||| ||||| || || |||||||| Sbjct 6634 ACCTGGCATCAAACCACGCTTCTTCATCCAGAAAATAGACGCAAAAGATCCGGAAAAGAA 6575 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 ||||| || || ||||| || || || | || ||||| | | ||||||| Sbjct 6574 GATGCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCGAATGTCGAGTCTTTGTCGGA 6515 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 ||||| || | |||||||| || || || | ||| || || || | | ||||| Sbjct 6514 TATCCAATTGAGTGCCCAGTCGGCCTTGCGTTTGATGCATGGGATGGTCTCGACAGCGTC 6455 Query 4787 AAATAATTTACTTTT-TTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 ||| | | ||| ||| |||||| | || || || || || || || || Sbjct 6454 AAAGAGGT-ACTCGCGTTCGGCTGGGTCCTTGATGTACGTATCGATGAGGAGCGAGTATG 6396 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905 | || ||||| || ||||| || || || || || || || || | || || | Sbjct 6395 TCTCCGAATGGATGTTTTCCATCATGATTTGGAAGCCATAGAAACACCGTGCCTCGGCAG 6336 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 ||||||||||||| | || | || || | || ||||| || || |||||| || | Sbjct 6335 CTTGAACTTCGTTTGAGAAGCGCTCGACCAGATTCTCGTTGACAATCCCGTCAGAAGCGG 6276 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTTTTCC 5022 | ||||| || ||||| ||||| ||||||| |||||| || ||| ||| ||| Sbjct 6275 CGAAAAAGGCTAAAACGTGAGAAATAAAGTGGCGTTCGTTGTCGTTGAGTTTGTTTGTCC 6216 Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082 ||| | | | || || | || || | ||| || ||||||||||||| ||||| |||| Sbjct 6215 AGTCGTGAAGGTCCTTCGACAAGTCCATTTCCTCTGCAGTCCAAAACGAAGCTTCAGCTT 6156 Query 5083 TTTTGTACAT 5092 | || ||||| Sbjct 6155 TCTTATACAT 6146 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 4262 GTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCAT 4321 ||| || || || ||||| ||||| || || || ||||||| | ||| || | ||||| Sbjct 7043 GTAATCCGACACGCGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGCGATATCATATCCAT 6984 Query 4322 AAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCG 4381 ||||||||||||||| || | || || ||| || | | || |||| || Sbjct 6983 AAAATCAAACGGATTGGTCGAATTATACACTTTATCGTTGCCCAACGAGACCAGCAGGCG 6924 Query 4382 GTCAGCTACAAATTCTATATACTGGCTCATGA-GTTCGCAGTTAATTCCAATTAATCTCA 4440 ||||||||||| || || || |||| ||||| | |||| ||| || ||||| ||| | | Sbjct 6923 ATCAGCTACAAACTCAATGTATTGGCACATGAGGGTCGC-GTTCATGCCAATCAATTTAA 6865 Query 4441 CAGGTAGCGC 4450 |||| || || Sbjct 6864 CAGGGAGAGC 6855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425985203961164