Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08]
204,508 sequences; 46,746,859 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq204124 176 4e-39
>seq204124
Length=22413
Score = 176 bits (194), Expect = 4e-39
Identities = 371/550 (67%), Gaps = 5/550 (1%)
Strand=Plus/Minus
Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606
||| |||||||| |||| |||||||| | ||| |||| ||||| ||||| || |
Sbjct 6694 ACAAGCAAAATCCGTGTGCATGCCTTCGTCCCGGCTGATCAACTCGTTGGAAAAGGTAAG 6635
Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666
|| ||||| ||||| | ||| || | ||| || |||| ||||| || || ||||||||
Sbjct 6634 ACCTGGCATCAAACCACGCTTCTTCATCCAGAAAATAGACGCAAAAGATCCGGAAAAGAA 6575
Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726
||||| || || ||||| || || || | || ||||| | | |||||||
Sbjct 6574 GATGCCCTCAACAGCGGCGAAAGCGACGAGACGTTCTCCGAATGTCGAGTCTTTGTCGGA 6515
Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786
||||| || | |||||||| || || || | ||| || || || | | |||||
Sbjct 6514 TATCCAATTGAGTGCCCAGTCGGCCTTGCGTTTGATGCATGGGATGGTCTCGACAGCGTC 6455
Query 4787 AAATAATTTACTTTT-TTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845
||| | | ||| ||| |||||| | || || || || || || || ||
Sbjct 6454 AAAGAGGT-ACTCGCGTTCGGCTGGGTCCTTGATGTACGTATCGATGAGGAGCGAGTATG 6396
Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905
| || ||||| || ||||| || || || || || || || || | || || |
Sbjct 6395 TCTCCGAATGGATGTTTTCCATCATGATTTGGAAGCCATAGAAACACCGTGCCTCGGCAG 6336
Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965
||||||||||||| | || | || || | || ||||| || || |||||| || |
Sbjct 6335 CTTGAACTTCGTTTGAGAAGCGCTCGACCAGATTCTCGTTGACAATCCCGTCAGAAGCGG 6276
Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTTTTCC 5022
| ||||| || ||||| ||||| ||||||| |||||| || ||| ||| |||
Sbjct 6275 CGAAAAAGGCTAAAACGTGAGAAATAAAGTGGCGTTCGTTGTCGTTGAGTTTGTTTGTCC 6216
Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082
||| | | | || || | || || | ||| || ||||||||||||| ||||| ||||
Sbjct 6215 AGTCGTGAAGGTCCTTCGACAAGTCCATTTCCTCTGCAGTCCAAAACGAAGCTTCAGCTT 6156
Query 5083 TTTTGTACAT 5092
| || |||||
Sbjct 6155 TCTTATACAT 6146
Score = 87.8 bits (96), Expect = 2e-12
Identities = 135/190 (71%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 4262 GTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCAT 4321
||| || || || ||||| ||||| || || || ||||||| | ||| || | |||||
Sbjct 7043 GTAATCCGACACGCGCTTCTCGAAAAAGTTGGTCTTGCCTTGGAGCGATATCATATCCAT 6984
Query 4322 AAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCG 4381
||||||||||||||| || | || || ||| || | | || |||| ||
Sbjct 6983 AAAATCAAACGGATTGGTCGAATTATACACTTTATCGTTGCCCAACGAGACCAGCAGGCG 6924
Query 4382 GTCAGCTACAAATTCTATATACTGGCTCATGA-GTTCGCAGTTAATTCCAATTAATCTCA 4440
||||||||||| || || || |||| ||||| | |||| ||| || ||||| ||| | |
Sbjct 6923 ATCAGCTACAAACTCAATGTATTGGCACATGAGGGTCGC-GTTCATGCCAATCAATTTAA 6865
Query 4441 CAGGTAGCGC 4450
|||| || ||
Sbjct 6864 CAGGGAGAGC 6855
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425985203961164
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |