Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq204495 170 4e-37 seq201019 111 3e-19 seq202811 109 1e-18 seq204124 95.1 3e-14 >seq204495 Length=136544 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || || || || | ||| || || ||||| |||||||| | | Sbjct 14674 CCGCCACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCGGAA 14733 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| |||||||| |||||||||||||| ||||| || || ||| Sbjct 14734 AGAGTTCGTCCGTCCTCGAGTTGTTTGCCGGCAAAGATCAAGCGTTGCTGATCGGGAGGA 14793 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||||||||| ||| | |||||||| || || | |||||| Sbjct 14794 ATGCCTTCCTTGTCTTGGATCTTTGCTTTCACGTTGTCGATAGTATCGGATGATTCGACC 14853 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 14854 TCCAACGTGATGGTCTTCCCGGTGAGCGTCTTCACGAAAATTTGCAT 14900 Score = 113 bits (124), Expect = 9e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 282945 TCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTG 283004 ||||| || || || ||||||||||| | || || || || ||||| ||||||||| Sbjct 14518 TCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTG 14577 Query 283005 TCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 || |||||||| || || ||| | ||||| |||||||| | || || || | ||||| Sbjct 14578 TCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGACGACTCTACCTCCAAGGTGATG 14637 Query 283065 GTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || ||||| ||||| || || |||||||| Sbjct 14638 GTCTTGCCTGTCAACGTCTTCACAAAAATCTGCAT 14672 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| || || || || || ||| ||||||| |||||||| | |||||||| Sbjct 15080 CCCTCCTTGTCCTGAATTTTCGCCTTGACGTTATCGATCGTGTCCGATGACTCGACTTCC 15139 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || |||||||| ||||| | ||||| ||||| |||||||| Sbjct 15140 AGGGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 15183 Score = 96.9 bits (106), Expect = 7e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| ||||| || ||||| | || || ||||||||||| || || | Sbjct 15185 CCTCCACGCAGACGAAGGACGAGATGGAGGGTCGACTCCTTTTGGATGTTATAATCCGAT 15244 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 | ||||| || ||||| ||||| |||||||| |||||||||||||||||||| Sbjct 15245 AAGGTGCGACCGTCCTCAAGTTGCTTCCCGGCGAAGATCAAACGTTGTTGGTC 15297 Score = 93.3 bits (102), Expect = 9e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||| |||||||||||||| || || || ||||||| || || || | ||||| ||| Sbjct 15361 CCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCGATGGTATCAGAGGACTCGACCTCG 15420 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| || || | ||||||||| || |||||||| Sbjct 15421 AGGGTGATGGTCTTTCCGGTGAGAGTCTTAACAAAGATCTGCAT 15464 >seq201019 Length=96896 Score = 111 bits (122), Expect = 3e-19 Identities = 125/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 230223 CTTATCGGCATGAATGCTGATC-TCATGGGGCAATATATCGAATTCGTAGCTGATCGTAT 230281 || || ||||||||||| || | | ||| | ||||| || ||||| || || || ||| | Sbjct 29658 CTGATTGGCATGAATGC-GACCTTGATGTGCCAATACATTGAATTTGTCGCAGACCGTCT 29716 Query 230282 TTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGA 230341 ||| ||| |||| || | || || || |||||||| | ||||||||||| || ||||| Sbjct 29717 TTTGGTGTCGCTTGGAAATGACAAGGTCTATAACTCAACGAACCCCTTCGACTTCATGGA 29776 Query 230342 GCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGT 230386 | || || ||||| || ||||| ||||| |||||||| || || Sbjct 29777 CATGATCTCGCTCCAAGGCAAAACGAACTTTTTCGAAAAACGCGT 29821 >seq202811 Length=6703 Score = 109 bits (120), Expect = 1e-18 Identities = 205/299 (69%), Gaps = 2/299 (1%) Strand=Plus/Plus Query 43983 CCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGAC 44042 ||| ||||| || || ||| | ||||| ||||| ||||| || |||| || | ||| Sbjct 487 CCAGGCGTCTACGTCTGAGCTTTACGGCAAGGTCGTGGAGACCCCGCAAAGCGAGACGAC 546 Query 44043 TCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAA 44102 |||||||| || || || ||||| || ||| | ||||| ||||||||| Sbjct 547 GCCGTTTTACCCGCGCTCGCCGTATGGATGCGCAAAGTTGTATGCGTATTGGATTGTGGT 606 Query 44103 AAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAG 44162 || ||| | ||| |||||||||||| | |||||| ||||| |||||||| || || Sbjct 607 GAACTATAGGGAGGCGTATGGGATGTATGCGTGTAATGGGATTTTGTTCAATCATGAGAG 666 Query 44163 TCCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTGCGAATATTTT 44222 ||| | ||||| ||| ||||| | || ||| ||| ||||| ||| ||| ||| Sbjct 667 TCCGAGGAGAGGAAGGACGTTTGTGACGAGGAAGATCTCGAGAGCGGCAGCGGATA-TTT 725 Query 44223 CAACGGGACAG-AAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGA 44280 | ||| || || || ||||||| ||||| || || | | | ||||||||| Sbjct 726 CGTTGGGCAAGCAATCGTGTTTGTATCTTGGAAATATTGATGCCCAGCGTGATTGGGGA 784 >seq204124 Length=22413 Score = 95.1 bits (104), Expect = 3e-14 Identities = 129/179 (72%), Gaps = 1/179 (1%) Strand=Plus/Plus Query 230226 ATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTC 230285 || |||||||| || |||||| | ||||| || || || ||||||||||| | | Sbjct 6873 ATTGGCATGAACGCGACCCTCATGTGCCAATACATTGAGTTTGTAGCTGATCGCCTGCTG 6932 Query 230286 GTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTC 230345 || || | || |||| ||||||||||| || | || || || | ||||||||| | Sbjct 6933 GTCTCGTTGGGCAACGATAAAGTGTATAATTCGACCAATCCGTTTGATTTTATGGATATG 6992 Query 230346 ATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAGGC 230403 || || ||||| || || || ||||| ||||| ||||| || ||||| || ||||| Sbjct 6993 ATATCGCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGCGTGTCGGATTACTCCAAGGC 7051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1043996472452232