Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq204495 147 5e-30 seq203754 87.8 4e-12 >seq204495 Length=136544 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || ||||| || || || ||||| | ||||| ||| || || Sbjct 14897 CAAATTTTCGTGAAGACGCTCACCGGGAAGACCATCACGTTGGAGGTCGAATCATCCGAT 14838 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| ||| |||||| || ||||| ||||| || ||||| || |||||| Sbjct 14837 ACTATCGACAACGTGAAAGCAAAGATCCAAGACAAGGAAGGCATTCCTCCCGATCAGCAA 14778 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| ||||| ||||| || ||| | |||||| |||| || || || Sbjct 14777 CGCTTGATCTTTGCCGGCAAACAACTCGAGGACGGACGAACTCTTTCCGACTACAATATC 14718 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 14717 CAGAAGGAGTCCACTCTTCACCTCGT 14692 Score = 107 bits (118), Expect = 5e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || | ||||| || || |||||| | ||||| || || ||| Sbjct 14669 CAGATTTTTGTGAAGACGTTGACAGGCAAGACCATCACCTTGGAGGTAGAGTCGTCGGAC 14610 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| |||||||| || || || || || || ||||| Sbjct 14609 ACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAGCAG 14550 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 || |||||||| ||||| || |||||||| || Sbjct 14549 CGCCTTATCTTTGCCGGCAAGCAGCTCGAGGA 14518 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 178024 GAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGA 178083 |||||||||| || || ||||| ||||| |||||||| || || |||||||||||| | | Sbjct 15025 GAATCCCTCCCGATCAACAACGTCTTATTTTCGCCGGCAAGCAACTCGAAGATGGACGCA 14966 Query 178084 CTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || | || |||||| | ||||| || || || || |||||||| Sbjct 14965 CGCTCTCGGACTATAACATTCAAAAGGAGTCCACCCTTCATCTTGT 14920 >seq203754 Length=64599 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| || || ||||| ||||||||||| || || || Sbjct 191 CAGATTTTCGTGAAAACCCTCACGGGGAAGACGATTACCCTCGAGGTAGAGTCGTCCGAT 250 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || ||||| || |||||| ||| || || ||||||||||| Sbjct 251 ACAATCGACAATGTCAAAGCAAAAATACAAGACAAAGAAGG 291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200577112790552