Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Macrocystidia_20cucumis_20[genbank_20GCA_5F001179725.1_202015-07-08] 204,508 sequences; 46,746,859 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq204495 107 2e-18 seq204496 82.4 7e-11 >seq204495 Length=136544 Score = 107 bits (118), Expect = 2e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || ||||||||||||||||| || || |||||||| || || | ||||| || ||||||| Sbjct 14518 TCCTCGAGCTGCTTGCCGGCAAAGATAAGGCGCTGCTGATCGGGGGGAATGCCCTCCTTG 14577 Query 41768 TCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTAT 41826 ||| ||| || |||| ||| | | | ||||| |||||| ||||||| || || Sbjct 14578 TCCTGGATCTTCGCCTTC-ACGTTGTCGATGGTGTCCGACGACTCTACCTCCAAGGTGAT 14636 Query 41827 CGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || |||| |||||| || ||||||||||| Sbjct 14637 GGTCTTGCCTGTCAACGTCTTCACAAAAATCTGCAT 14672 Score = 98.7 bits (108), Expect = 9e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || ||| |||||| |||||||||||||| || Sbjct 14901 GCCTCCACGGAGACGCAGGACAAGATGAAGGGTGGACTCCTTTTGAATGTTATAGTCCGA 14960 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 ||| ||||| | || ||||| |||||||||||||| || || || ||||| || Sbjct 14961 GAGCGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAAATAAGACGTTGTTGATC 15014 >seq204496 Length=81202 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||| || || |||||| ||||||||||||||| Sbjct 37325 CCACCACGGAGACGAAGCACCAAATGAAGAGTCGACTCCTTTTGAATGTTATAGTCGCTC 37384 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 | ||||| | || || || |||||||| ||||| || || ||||||||||| Sbjct 37385 AAAGTGCGACCATCCTCCAGTTGCTTGCCCGCGAAGATGAGACGCTGTTGGTC 37437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461122189169600