Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq14 143 3e-29 seq8 96.9 4e-15 >seq14 Length=25249 Score = 143 bits (158), Expect = 3e-29 Identities = 428/655 (65%), Gaps = 4/655 (1%) Strand=Plus/Minus Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 || ||||||| |||||| || |||| | || || || ||| || | ||||||||| Sbjct 6905 GGGCACATCAGCGACCAGTCGCCGTTCTGCTCGACGCGGCGCATGAACAAGTCAGGAATC 6846 Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 || || || | || || || | | | ||||| || || || || ||| Sbjct 6845 CACAGCGCCAGGAACAGGTCGCGCGCGCGCACCTCCTCCTTACCGTGGTTTTTGCGCAGA 6786 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 || | |||| | | | || || |||||||| |||| ||| |||| | | || || Sbjct 6785 TCAATGAACTCGAACACGTCCGAGTGCCACGGCTCCAGGTAGATGGCAAAGGCACCGGGA 6726 Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235 || ||||| || ||||| || | ||| | || ||||| || || || | | ||| || Sbjct 6725 CGCTTGTTGCCACCCTGGTCCACGTAGCGCGCTGTGTTGTTGTATACGCGGAGCATGGGC 6666 Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 54295 | |||||| ||| | ||||| || |||| || || || | ||||| || || Sbjct 6665 ACAATACCGTTGCTCACGCCATTCGTACCGGCAATGTACGAGCCCGTTGCACGGATGTTG 6606 Query 54296 CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGT 54354 || ||||| || || || ||| | || ||| | ||||| ||| || | ||| Sbjct 6605 TGGATATTCAGACCAATACCACCGGCCGTCTTGCTGATCATCGCGCA-CGTCTTGAGCGT 6547 Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 54414 || ||||| ||||| ||| || ||| ||||| | | || || ||| |||||||| Sbjct 6546 GTCGTAGATACCCTCGATAGAGTCGTCCTTCATGCTCACAAGGAAGCAGGACGACATTTG 6487 Query 54415 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 54474 | | || || ||||| || | ||| || || ||||| ||||| || || || Sbjct 6486 GGGGTTGGGCGTGCCAGCATTGAACAGGGTCGGCGACGCGTGTGTAAAGGCCTTCTCGGA 6427 Query 54475 AA-GTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGA 54533 | |||| ||||| ||||| || || | | |||| || || || || |||| Sbjct 6426 CATGTAG-TTGTATGTCTCAATGGCGCTCTTCACATCCTCGCCGTGGATGCCCACAGCGA 6368 Query 54534 CACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGG 54593 ||||||| | ||||||||| || | || ||| |||| || || ||||| ||||| Sbjct 6367 CACGCATGAGCATGTGCTGGGGGCGCTCCGCGACCTTGCCATTGATGCGCAGCAGGTAGG 6308 Query 54594 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 54648 | |||| || || || || ||| ||||||| |||||| || |||||||| Sbjct 6307 AGCGCTCCAGCGTCTTGAAGCCGAAAAAGTTGTAGTGAAAGTCGCGCTCGTAAAT 6253 >seq8 Length=40485 Score = 96.9 bits (106), Expect = 4e-15 Identities = 368/572 (64%), Gaps = 18/572 (3%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||| ||| ||||||||||| | || | ||||| || |||| || Sbjct 5236 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAACGACAGG 5177 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| || || ||||| || |||||||| ||||| ||||| || || || || || Sbjct 5176 CCAGGCATGAGACCGCGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCCGAGAAAAAG 5117 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC-CGGCGC---TGTCATG 24310 || || || || || |||||||| | || | || | | ||| ||||| |||| Sbjct 5116 ATGCCCTCGACGGCGGCAAAGGCGACCAGGCGCTC-CGAGAACGAGGCGCGCTTGTCCGA 5058 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| ||||| |||||||||| || || ||| || ||||| || || || Sbjct 5057 GATCCAGCGCAAGGCCCACTCGGCCTTCTGCTTGACGACAGGGATGGTCTCGATGGCGTT 4998 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTA----TCAATCAAAAGACTAT 24426 |||||| || || | | || | || ||||| ||||| | || | Sbjct 4997 AAAGAGGTA----TTCGCGCTGCTCCGACTCACGGATGTACGTGTCAATGAGGAGCGAGT 4942 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 || | ||||| || ||||| || || || ||||| |||||||| || | ||||| | Sbjct 4941 ACGTCTCCGAGTGGATGTTCTCCATCATAATCTGAAAGCCGTAGAAGCAGCGGGCCTCAG 4882 Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 ||| || || | || || || | | || || || || || ||||| || Sbjct 4881 CGGCCTGCACCTCGGCGCTGAAGCGCTCCACCAGGTTCTCGTTGACGATGCCGTCTGAGG 4822 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTA 24602 | ||||| || |||| ||||| ||| ||| | || | || ||| | | Sbjct 4821 CAGCAAAGAAGGCCAGGACATGGCTTACAAAGTGGCGCTCAT-TGTCGTTCATGCGGTGG 4763 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 | ||| || | | || || || | |||| || || | ||||| || || ||||| Sbjct 4762 TCCCAGTCGTGCAGGTCCTTCGACAGGTCCATCTCCTCGGCGGTCCAGAACGACGCCTCG 4703 Query 24663 GCCTTTTTATACATATTCCAGATGTCATGATA 24694 ||||| || ||||| | |||||| || || || Sbjct 4702 GCCTTCTTGTACATCTGCCAGATCTCGTGGTA 4671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719900471920