Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq8 132 4e-26 seq27 127 2e-24 seq102 125 6e-24 seq14 113 4e-20 seq105 98.7 9e-16 seq22 86.0 5e-12 >seq8 Length=40485 Score = 132 bits (146), Expect = 4e-26 Identities = 247/360 (69%), Gaps = 11/360 (3%) Strand=Plus/Plus Query 44942 ATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCAAC 45001 ||||| || ||| |||| ||||| | || ||| | ||||| |||||||||||| || Sbjct 5169 ATGCCTGGCCTGTCGTTCTCGAACGAGCTCATCTCGCGTGACGAGGGTCTGCACACCGAC 5228 Query 45002 TTTGCCTGCCTCTACTATAATACGAGAGTCGATCAAAAGTTGGACGCGCCC----ACCGT 45057 ||||||||||||| | | | | || | ||| | ||| ||| || || Sbjct 5229 TTTGCCTGCCTCTTGTTCA----GCCACCTGA--AGAAGCGCG-CGCACCCCGACACGGT 5281 Query 45058 CAACGACATGTTCTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCC 45117 ||| ||| || |||| ||||||||||| ||| ||| ||||| | || || ||||| Sbjct 5282 GAACCGCATCATCACCGAGGCCGTGGCCATTGAGCAGGACTTTTTGACCGACGCCCTGCC 5341 Query 45118 CGAATCGTTGGTGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGA 45177 || ||| || | || ||||||||| | ||| | |||||||||||||||| ||||| Sbjct 5342 CGTCTCGCTGATCGGCATGAACGCGCGCCTCATGTGCCAGTACATTGAGTTTGTGGCCGA 5401 Query 45178 TCGTCTTCTCGTCCAGTTAAAGTATCCCAAGATGTACTATACTGAGAACCCATTCGAGTT 45237 || || || ||| | | | |||||| ||| | | | |||||| || || || Sbjct 5402 CCGCCTGCTGGTCAACCTCGGCAACCCCAAGCACTACAACTCGGCGAACCCCTTTGACTT 5461 Query 45238 TATGAACAATATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATA 45297 |||| | || |||||| | ||||||| | || ||||| ||| ||||| | ||| || Sbjct 5462 TATGGAGAACATTTCGCTCCAGGGCAAGTCGAACTTTTTCGAGCGCCGCGTGGCCGACTA 5521 >seq27 Length=62815 Score = 127 bits (140), Expect = 2e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| ||||||| ||||| ||||||||||| || |||||| | Sbjct 52899 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCGAGCTGCTTACCAGCGAA 52958 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 || |||||||| || || ||||| ||||||||||| || || || || || | Sbjct 52959 AATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTTATCCTGGATCTTGGCCTTGACATT 53018 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| ||||||| ||||||||| | ||| | ||| ||||| |||||||| || || Sbjct 53019 GTCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTGCCAGTCAGAGTCTTGAC 53078 Query 118727 AAAAATCTGCATGGC 118741 || || |||||||| Sbjct 53079 GAAGATTTGCATGGC 53093 >seq102 Length=51898 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| ||||||| ||| || |||||| ||||| || ||||| | Sbjct 8988 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCCAGCTGCTTACCAGCAAA 8929 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| |||||||| || || ||||| || ||||||||||| ||| || || || | Sbjct 8928 GATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTT 8869 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| ||||||| || ||||||| ||| | ||| ||||| || || || ||||| Sbjct 8868 GTCGATCGTGTCCGACGATTCCACCTCGAGGGTAATCGTCTTGCCAGTGAGGGTCTTTAC 8809 Query 118727 AAAAATCTGCAT 118738 |||||| ||||| Sbjct 8808 AAAAATTTGCAT 8797 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| ||||||| ||| || |||||| ||||| || ||||| | Sbjct 9216 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCCAGCTGCTTACCAGCAAA 9157 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| |||||||| || || ||||| |||||||||||||| ||| || || || | Sbjct 9156 GATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATT 9097 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 || | ||||||| || ||||||| || | ||| ||||| || || || || || Sbjct 9096 GTCAATCGTGTCCGACGATTCCACCTCGAGGGGAATCGTCTTGCCAGTGAGGGTCTTGAC 9037 Query 118727 AAAAATCTGCAT 118738 || |||||||| Sbjct 9036 GAAGATCTGCAT 9025 >seq14 Length=25249 Score = 113 bits (124), Expect = 4e-20 Identities = 168/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 134394 ATCAACGCGGAC-TCGTGTAGAGTCTTGTAAATGCCATCGACGCTGTCGTCCTTGATGCT 134452 |||| |||| || || || || || | ||| || || |||| ||||||||| ||||| Sbjct 6569 ATCATCGCGCACGTCTTG-AGCGTGTCGTAGATACCCTCGATAGAGTCGTCCTTCATGCT 6511 Query 134453 TTGCAGGAAACACGAACACATTTGTTGACGACGCGTACCCGCCGAAAACAGAGTCGGGCT 134512 ||||| || || ||||||| | |||| || || ||||| ||||| Sbjct 6510 CACAAGGAAGCAGGACGACATTTGGGGGTTGGGCGTGCCAGCATTGAACAGGGTCGGCGA 6451 Query 134513 CGCGTGCGTAAAGG--TGCCCAGACTCATCAACTGATATGTTTCAATGACGCTCTTAACG 134570 |||||| ||||||| | | | ||| || | | ||||| |||||| ||||||| || Sbjct 6450 CGCGTGTGTAAAGGCCTTCTCGGAC--ATGTAGTTGTATGTCTCAATGGCGCTCTTCACA 6393 Query 134571 TCGTCGCCGTGAATGGCCAGAGCGACGCGCATGAGCATGTGTTGGGGTCTCTCC 134624 || |||||||| ||| ||| |||||| |||||||||||||| ||||| | |||| Sbjct 6392 TCCTCGCCGTGGATGCCCACAGCGACACGCATGAGCATGTGCTGGGGGCGCTCC 6339 >seq105 Length=229645 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || || |||||||| ||||||| ||||| |||||| ||||| || || ||| | Sbjct 227277 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCCTCCAGCTGCTTGCCCGCGAA 227218 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| || ||||| || || || || || ||||||||||| || || || || | Sbjct 227217 GATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTCACATT 227158 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| ||||| | ||| ||||| | ||| | ||| || |||||||| || || || Sbjct 227157 CTCGATCGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCGGTCAGGGTCTTGAC 227098 Query 118727 AAAAATCTGCATGG 118740 || | ||||||| Sbjct 227097 GAACACTTGCATGG 227084 >seq22 Length=101165 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| || | || || | ||| | || ||| ||||| || ||||| ||||| Sbjct 10439 ACCACCGCGCAAACGCAGGACGAGGTGCAGCGTGCTCTCCTTTTGGATATTGTAGTCGCT 10498 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| ||| |||||| ||||| || || || | || || |||||||| || || || Sbjct 10499 CAAAGTACGCCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCCGGCGG 10558 Query 118631 TATGCCCTCCTTGTC 118645 |||||||||||||| Sbjct 10559 AATGCCCTCCTTGTC 10573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829189206468