Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq102 138 1e-27 seq27 109 6e-19 seq22 104 3e-17 seq105 95.1 1e-14 >seq102 Length=51898 Score = 138 bits (152), Expect = 1e-27 Identities = 165/219 (75%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||| | ||||| ||||||||||| || || ||||| || |||||| || | Sbjct 9012 ACGCAGCACGAGATGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCC 8953 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||||||||| || || || ||||| ||||| | || | | |||||| Sbjct 8952 ATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTT 8893 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 |||| ||| | || | |||| ||| | | | |||||| ||||||||| |||| || Sbjct 8892 GTCC-TGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGACGATTCCACCTCGAGGGTA 8835 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || || ||||| || || ||||||||||| ||||||||| Sbjct 8834 ATCGTCTTGCCAGTGAGGGTCTTTACAAAAATTTGCATT 8796 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | ||||| || |||||||| || || ||||| || |||||| || | Sbjct 9239 CGCAGCACGAGATGCAGCGTACTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCA 9180 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||||||||| || || || ||||| ||||| | || | || ||||||| Sbjct 9179 TCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTTG 9120 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| | || | |||| | | | |||||| ||||||||| |||| | || Sbjct 9119 TCC-TGAATCTTGGCCTTGACATTGTCAATCGTGTCCGACGATTCCACCTCGAGGGGAAT 9061 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || ||||| || ||||| ||||| Sbjct 9060 CGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 9025 >seq27 Length=62815 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||||||||||| || || ||||| || ||| || || |||| || |||||| Sbjct 52888 TGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCGAGCTGC 52947 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 ||||||||||| || || ||||| ||||| | || | || |||||| ||| ||| || Sbjct 52948 TTACCAGCGAAAATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTTATCCTGGATCTTG 53007 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 |||| | | | |||||| || || || || | ||||| || ||||| || Sbjct 53008 GCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTGCCAGTC 53067 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || ||||||||||| Sbjct 53068 AGAGTCTTGACGAAGATTTGCAT 53090 >seq22 Length=101165 Score = 104 bits (114), Expect = 3e-17 Identities = 171/246 (70%), Gaps = 28/246 (11%) Strand=Plus/Plus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 ||||||| || | |||| |||||||||||||| |||||||| || || ||| ||| Sbjct 10449 AAACGCAGGACGAGGTGCAGCGTGCTCTCCTTTTGGATATTGTAGTCGCTCAAAGTACGC 10508 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 | || || |||||||| || || || || || ||||||||||| | ||| | || |||| Sbjct 10509 CCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCC 10568 Query 43086 TTGTCCATGATTTT----TTGTTTG--------AGCGTCGCC------ACCGTG-TCGCT 43126 |||||| ||| || ||| || | | ||||| ||| || ||| | Sbjct 10569 TTGTCCTGGATCTTGGTCTTGACTGCCTCGGTTACCATCGCCCCACGTACCATGCTCGAT 10628 Query 43127 CGATTC--------CACA-TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGAT 43177 ||| || | || || | |||||| ||||| ||||| |||||||||||||| || Sbjct 10629 CGAGTCGCTGCTCTCGCACTCCAACGTGATCGTTTTCCCCGTCAGCGTCTTTACAAAAAT 10688 Query 43178 TTGCAT 43183 ||||| Sbjct 10689 CTGCAT 10694 >seq105 Length=229645 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | |||| ||||||||||| || || ||||| || ||| || || | Sbjct 227300 CGCAGCACGAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCA 227241 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || ||||| ||||| | || | | ||||||| Sbjct 227240 TCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTTG 227181 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||||| || ||||| || | ||||| Sbjct 227180 TCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCGGAAGACTCCACCTCAAGGGTGATC 227121 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || || ||||| || || | |||||| Sbjct 227120 GTCTTCCCGGTCAGGGTCTTGACGAACACTTGCAT 227086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571815963172120