Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq27 149 5e-31 seq105 145 6e-30 seq102 141 7e-29 seq22 84.2 2e-11 >seq27 Length=62815 Score = 149 bits (164), Expect = 5e-31 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| |||||||||||||| |||||||||||| |||| |||| |||| || || || Sbjct 52887 GTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCCTCGAGCTG 52946 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| ||||||||||| ||||| | |||||||| ||| || || Sbjct 52947 CTTACCAGCGAAAATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTTATCCTGGATCTT 53006 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | ||||| | ||| ||||| | ||| ||||||||||| || Sbjct 53007 GGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTGCCAGT 53066 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||||||||| || |||||||||||| Sbjct 53067 CAGAGTCTTGACGAAGATTTGCATG 53091 >seq105 Length=229645 Score = 145 bits (160), Expect = 6e-30 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||||||||||||||||||| |||||||||||| |||| |||| | || ||||| || Sbjct 227289 GTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCCTCCAGCTG 227230 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| ||||||||||| || || | ||||||||||||| || || Sbjct 227229 CTTGCCCGCGAAGATCAGGCGCTGTTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTT 227170 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||||||||| | ||| |||||||| || || Sbjct 227169 GGCCTTCACATTCTCGATCGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCGGT 227110 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| ||||| || || | ||||||| Sbjct 227109 CAGGGTCTTGACGAACACTTGCATG 227085 >seq102 Length=51898 Score = 141 bits (156), Expect = 7e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 |||||||||||||||||||| |||||||||||| |||| || | || ||||| || Sbjct 8999 TGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCCAGCTGC 8940 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || |||| ||||||||||| ||||| | ||||||||||||| ||| || Sbjct 8939 TTACCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTG 8880 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | ||||| |||||||| | ||||||||||||||| || Sbjct 8879 GCCTTGACGTTGTCGATCGTGTCCGACGATTCCACCTCGAGGGTAATCGTCTTGCCAGTG 8820 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||| |||||||| Sbjct 8819 AGGGTCTTTACAAAAATTTGCAT 8797 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 |||||||| ||||||||||| |||||||||||| |||| || | || ||||| || Sbjct 9227 TGCAGCGTACTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCCAGCTGC 9168 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || |||| ||||||||||| ||||| | |||||||||||| ||| || Sbjct 9167 TTACCAGCAAAGATCAGACGCTGTTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTG 9108 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | ||||| |||||||| | || |||||||||||| || Sbjct 9107 GCCTTGACATTGTCAATCGTGTCCGACGATTCCACCTCGAGGGGAATCGTCTTGCCAGTG 9048 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| Sbjct 9047 AGGGTCTTGACGAAGATCTGCAT 9025 >seq22 Length=101165 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 45104 TCTTCGC--CACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGT 45161 ||||||| |||| | ||| | | || | |||||||||||||||||| || || |||| Sbjct 10432 TCTTCGCACCACCGCGCAAACGCAGGACGAGGTGCAGCGTGCTCTCCTTTTGGATATTGT 10491 Query 45162 AGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGT 45221 ||||| ||| || | || ||||| || || || || || |||| ||||| |||| Sbjct 10492 AGTCGCTCAAAGTACGCCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGT 10551 Query 45222 CGGGAGGCACACCCTCCTTGTCC 45244 | || || | |||||||||||| Sbjct 10552 CCGGCGGAATGCCCTCCTTGTCC 10574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074097369809