Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq14 141 1e-28 seq8 114 2e-20 >seq14 Length=25249 Score = 141 bits (156), Expect = 1e-28 Identities = 437/671 (65%), Gaps = 4/671 (1%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||||| |||||| || |||| | || || || ||| || | ||||||||| Sbjct 6905 GGGCACATCAGCGACCAGTCGCCGTTCTGCTCGACGCGGCGCATGAACAAGTCAGGAATC 6846 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || || || | || || || | | | ||||| || || || || ||| Sbjct 6845 CACAGCGCCAGGAACAGGTCGCGCGCGCGCACCTCCTCCTTACCGTGGTTTTTGCGCAGA 6786 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 || | |||| | | | || || |||||||| |||| ||| ||||| | | || || Sbjct 6785 TCAATGAACTCGAACACGTCCGAGTGCCACGGCTCCAGGTAGATGGCAAAGGCACCGGGA 6726 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||||| || ||||| || | ||| | || ||||| || || || | | ||| || Sbjct 6725 CGCTTGTTGCCACCCTGGTCCACGTAGCGCGCTGTGTTGTTGTATACGCGGAGCATGGGC 6666 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 | ||||||||| | ||||| ||||||| || || || | ||||| || || Sbjct 6665 ACAATACCGTTGCTCACGCCATTCGTACCGGCAATGTACGAGCCCGTTGCACGGATGTTG 6606 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGT 63592 || ||||| || || || ||| | || ||| | ||||| ||| || | ||| Sbjct 6605 TGGATATTCAGACCAATACCACCGGCCGTCTTGCTGATCATCGCGCA-CGTCTTGAGCGT 6547 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63652 ||| ||||| || || || || || ||||| | | || || ||| |||||||| Sbjct 6546 GTCGTAGATACCCTCGATAGAGTCGTCCTTCATGCTCACAAGGAAGCAGGACGACATTTG 6487 Query 63653 GTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63712 | | | || || ||||| || | ||| || || ||||| ||||| || || || Sbjct 6486 GGGGTTGGGCGTGCCAGCATTGAACAGGGTCGGCGACGCGTGTGTAAAGGCCTTCTCGGA 6427 Query 63713 AA-GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGA 63771 | |||| ||||| |||||||| || | | |||| || || || || |||| Sbjct 6426 CATGTAG-TTGTATGTCTCAATGGCGCTCTTCACATCCTCGCCGTGGATGCCCACAGCGA 6368 Query 63772 CACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGG 63831 ||||||| | ||||||||| || | || | | ||| || || || || ||||| Sbjct 6367 CACGCATGAGCATGTGCTGGGGGCGCTCCGCGACCTTGCCATTGATGCGCAGCAGGTAGG 6308 Query 63832 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAA 63891 | |||| || || || || ||| ||||||| |||||| || |||||||| | Sbjct 6307 AGCGCTCCAGCGTCTTGAAGCCGAAAAAGTTGTAGTGAAAGTCGCGCTCGTAAATGACCG 6248 Query 63892 CCGAATTGAGC 63902 |||| | |||| Sbjct 6247 CCGAGTCGAGC 6237 >seq8 Length=40485 Score = 114 bits (126), Expect = 2e-20 Identities = 379/584 (65%), Gaps = 18/584 (3%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||||||||||||||| | || | ||||| || |||| || Sbjct 5236 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAACGACAGG 5177 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || |||||||| ||||| || || || || || || ||| Sbjct 5176 CCAGGCATGAGACCGCGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCCGAGAAAAAG 5117 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGC---TGTCATG 33757 || || || || || |||||||| | || | ||| | | ||| ||||| |||| Sbjct 5116 ATGCCCTCGACGGCGGCAAAGGCGACCAGGCGCTC-CGAGAACGAGGCGCGCTTGTCCGA 5058 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| ||||| |||||||||| || || ||| || || || ||||| || Sbjct 5057 GATCCAGCGCAAGGCCCACTCGGCCTTCTGCTTGACGACAGGGATGGTCTCGATGGCGTT 4998 Query 33818 AAAGAGATAGtttttttCATTACT----ATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 |||||| || || | | || || | || || || || | || | Sbjct 4997 AAAGAGGTA----TTCGCGCTGCTCCGACTCACGGATGTACGTGTCAATGAGGAGCGAGT 4942 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 || | ||||| || ||||| || || |||||||| |||||||| || | ||||| | Sbjct 4941 ACGTCTCCGAGTGGATGTTCTCCATCATAATCTGAAAGCCGTAGAAGCAGCGGGCCTCAG 4882 Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 |||||| || | | || || || | | || || || || || || || || Sbjct 4881 CGGCCTGCACCTCGGCGCTGAAGCGCTCCACCAGGTTCTCGTTGACGATGCCGTCTGAGG 4822 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTA 34049 | ||||| || |||| ||||| ||| ||| | || | || ||| | | Sbjct 4821 CAGCAAAGAAGGCCAGGACATGGCTTACAAAGTGGCGCTCAT-TGTCGTTCATGCGGTGG 4763 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 | ||| || | | || || || | |||| || || | ||||| || || ||||| Sbjct 4762 TCCCAGTCGTGCAGGTCCTTCGACAGGTCCATCTCCTCGGCGGTCCAGAACGACGCCTCG 4703 Query 34110 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 ||||| || ||||| | |||||| || || || |||| ||||| Sbjct 4702 GCCTTCTTGTACATCTGCCAGATCTCGTGGTAGCGGATCGGGAA 4659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815797147120