Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq14 149 9e-31 seq8 138 2e-27 >seq14 Length=25249 Score = 149 bits (164), Expect = 9e-31 Identities = 447/685 (65%), Gaps = 4/685 (1%) Strand=Plus/Minus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 || || || ||| | || ||||||| |||||| || || | | || || || ||| Sbjct 6920 CCGGGGCACTCGGCGGGGCACATCAGCGACCAGTCGCCGTTCTGCTCGACGCGGCGCATG 6861 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 || | ||||||||||| || || | || || || | | | |||||| || || Sbjct 6860 AACAAGTCAGGAATCCACAGCGCCAGGAACAGGTCGCGCGCGCGCACCTCCTCCTTACCG 6801 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 || || ||||| | |||| | | | || || |||||||| |||| ||| ||| Sbjct 6800 TGGTTTTTGCGCAGATCAATGAACTCGAACACGTCCGAGTGCCACGGCTCCAGGTAGATG 6741 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | || || || ||||| || ||||| || | ||| | || ||||| || || Sbjct 6740 GCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCCACGTAGCGCGCTGTGTTGTTGTAT 6681 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 || | | ||| || | |||||| ||| ||||| || |||| || || || Sbjct 6680 ACGCGGAGCATGGGCACAATACCGTTGCTCACGCCATTCGTACCGGCAATGTACGAGCCC 6621 Query 80191 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 80250 | ||||| || || || ||||| || || || ||| | || ||| | ||| Sbjct 6620 GTTGCACGGATGTTGTGGATATTCAGACCAATACCACCGGCCGTCTTGCTGATCATCGCG 6561 Query 80251 CATCGTTTTAA-CGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAA 80309 || ||| || | ||| || ||||| ||||| || || || ||||| | | || || Sbjct 6560 CA-CGTCTTGAGCGTGTCGTAGATACCCTCGATAGAGTCGTCCTTCATGCTCACAAGGAA 6502 Query 80310 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 80369 ||| ||||||||| | || || ||||| || | ||| || || ||||| || Sbjct 6501 GCAGGACGACATTTGGGGGTTGGGCGTGCCAGCATTGAACAGGGTCGGCGACGCGTGTGT 6442 Query 80370 AAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGAT 80428 ||| || || |||| |||| ||||| |||||||| || | | |||| | Sbjct 6441 AAAGGCCTTCTCGGACATGTAG-TTGTATGTCTCAATGGCGCTCTTCACATCCTCGCCGT 6383 Query 80429 GAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTA 80488 | || || || ||||||||||| | ||||||||| || | || ||| |||| ||| | Sbjct 6382 GGATGCCCACAGCGACACGCATGAGCATGTGCTGGGGGCGCTCCGCGACCTTGCCATTGA 6323 Query 80489 TTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 80548 | || || ||| || |||| || || || || ||| ||||||| |||||| | Sbjct 6322 TGCGCAGCAGGTAGGAGCGCTCCAGCGTCTTGAAGCCGAAAAAGTTGTAGTGAAAGTCGC 6263 Query 80549 GTTCGTAAATAATAACCGAGTTGAG 80573 | |||||||| | |||||| ||| Sbjct 6262 GCTCGTAAATGACCGCCGAGTCGAG 6238 >seq8 Length=40485 Score = 138 bits (152), Expect = 2e-27 Identities = 384/583 (66%), Gaps = 16/583 (3%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||||||||||||||| | || || ||||| || |||| || Sbjct 5236 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAACGACAGG 5177 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| || || ||||| || |||||||| ||||| ||||| || || || || ||| Sbjct 5176 CCAGGCATGAGACCGCGCTTCTTGAGCCAAAAGATGGAGGCAAACGAGCCCGAGAAAAAG 5117 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAAC-TGGCGC---TGTCATG 50135 || || || || ||||||||||| || || | ||| | | ||| ||||| |||| Sbjct 5116 ATGCCCTCGACGGCGGCAAAGGCGACCAGGCGCTC-CGAGAACGAGGCGCGCTTGTCCGA 5058 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| ||||| |||||||||| || || ||| || || || ||||| || Sbjct 5057 GATCCAGCGCAAGGCCCACTCGGCCTTCTGCTTGACGACAGGGATGGTCTCGATGGCGTT 4998 Query 50196 AAAGAGATAGtttttttCATTACT----ATCTTTAACATAAGTATCGATCAAAAGACTAT 50251 |||||| || || | | || || | || || || || | || | Sbjct 4997 AAAGAGGTA----TTCGCGCTGCTCCGACTCACGGATGTACGTGTCAATGAGGAGCGAGT 4942 Query 50252 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311 || | ||||| || ||||| || || |||||||| |||||||| || | ||||| | Sbjct 4941 ACGTCTCCGAGTGGATGTTCTCCATCATAATCTGAAAGCCGTAGAAGCAGCGGGCCTCAG 4882 Query 50312 TAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGG 50371 |||||| || | | || || || | | || || || || || ||||| || Sbjct 4881 CGGCCTGCACCTCGGCGCTGAAGCGCTCCACCAGGTTCTCGTTGACGATGCCGTCTGAGG 4822 Query 50372 CTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTG-GGT--GTTAGTTTAT 50428 | ||||| || |||| ||||| ||| ||| || || ||| || | | | | Sbjct 4821 CAGCAAAGAAGGCCAGGACATGGCTTACAAAGTGGCGCTCATTGTCGTTCATGCGGTGGT 4762 Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488 ||| || | | || || || | || | || || | ||||| || || ||||| | Sbjct 4761 CCCAGTCGTGCAGGTCCTTCGACAGGTCCATCTCCTCGGCGGTCCAGAACGACGCCTCGG 4702 Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 |||| || ||||| | |||||| || || || |||| ||||| Sbjct 4701 CCTTCTTGTACATCTGCCAGATCTCGTGGTAGCGGATCGGGAA 4659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266743955560