Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq14 149 8e-31 >seq14 Length=25249 Score = 149 bits (164), Expect = 8e-31 Identities = 359/538 (67%), Gaps = 4/538 (1%) Strand=Plus/Minus Query 72106 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCC 72165 ||||| | |||| | | | || || |||||||| |||| ||| ||||| | | || Sbjct 6788 AGATCAATGAACTCGAACACGTCCGAGTGCCACGGCTCCAGGTAGATGGCAAAGGCACCG 6729 Query 72166 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 72225 || || ||||| || ||||| || | ||| | || ||||| || || || | | ||| Sbjct 6728 GGACGCTTGTTGCCACCCTGGTCCACGTAGCGCGCTGTGTTGTTGTATACGCGGAGCATG 6669 Query 72226 GGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA 72285 || | |||||| ||| | ||||| || |||| || || || | ||||| || Sbjct 6668 GGCACAATACCGTTGCTCACGCCATTCGTACCGGCAATGTACGAGCCCGTTGCACGGATG 6609 Query 72286 TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA- 72344 ||| || ||||| || || || ||| | || ||| | ||||| ||| || | Sbjct 6608 TTGTGGATATTCAGACCAATACCACCGGCCGTCTTGCTGATCATCGCGCA-CGTCTTGAG 6550 Query 72345 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 72404 ||| || ||||| ||||| ||| || ||| ||||| | | || || ||| ||||| Sbjct 6549 CGTGTCGTAGATACCCTCGATAGAGTCGTCCTTCATGCTCACAAGGAAGCAGGACGACAT 6490 Query 72405 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 72464 |||| | || || ||||| || | ||| || || ||||| ||||| || || Sbjct 6489 TTGGGGGTTGGGCGTGCCAGCATTGAACAGGGTCGGCGACGCGTGTGTAAAGGCCTTCTC 6430 Query 72465 AGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCG 72523 |||| |||| ||||| |||||||| || | | |||| || || || || | Sbjct 6429 GGACATGTAG-TTGTATGTCTCAATGGCGCTCTTCACATCCTCGCCGTGGATGCCCACAG 6371 Query 72524 CGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGT 72583 |||||||||| | ||| ||||| || | || ||| |||| ||| || || || || Sbjct 6370 CGACACGCATGAGCATGTGCTGGGGGCGCTCCGCGACCTTGCCATTGATGCGCAGCAGGT 6311 Query 72584 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 72641 |||| |||| || || || || ||| ||||||| |||||| || |||||||| Sbjct 6310 AGGAGCGCTCCAGCGTCTTGAAGCCGAAAAAGTTGTAGTGAAAGTCGCGCTCGTAAAT 6253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137278864040