Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malassezia_20caprae_20[genbank_20GCA_5F001264625.1_202015-08-11] 229 sequences; 7,580,816 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq8 291 1e-73 seq14 210 3e-49 >seq8 Length=40485 Score = 291 bits (322), Expect = 1e-73 Identities = 589/863 (68%), Gaps = 26/863 (3%) Strand=Plus/Plus Query 124999 TTCCC-ATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| ||| | || || || || ||| | |||||||| ||||| |||| || || ||| Sbjct 4659 TTCCCGATCCGCTACCACGAGATCTGGCAGATGTACAAGAAGGCCGAGGCGTCGTTCTGG 4718 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | ||| ||| | || ||||| ||||||||| |||| ||||| || ||| || Sbjct 4719 ACCGCCGAGGAGATGGACCTGTCGAAGGACCTGCACGACTGGGACCACCGCATGAACGAC 4778 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 | |||||| | ||| || || | ||||||||||||| | ||| || || |||||| Sbjct 4779 AATGAGCGCCACTTTGTAAGCCATGTCCTGGCCTTCTTTGCTGCCTCAGACGGCATCGTC 4838 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCA--GAGGTGTCGTGCT 125235 ||||| || ||| || || ||| ||| || || || |||| |||| Sbjct 4839 AACGAGAACCTGGTGGAGCGCTTCAGCGCCGAGGTG--CAGGCCGCTGAGGCCCGCTGCT 4896 Query 125236 TTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTG 125295 | ||||| || || || ||||| |||||| | |||||||| | |||||| || |||| Sbjct 4897 TCTACGGCTTTCAGATTATGATGGAGAACATCCACTCGGAGACGTACTCGCTCCTCATTG 4956 Query 125296 ACATGTACATTCGCGATCCG---CAACGTAAACACATGCTCTTTAACGCAATCGACACGG 125352 ||| |||||| || || || || || || || ||||||||||| ||||| || Sbjct 4957 ACACGTACATCCGTGAGTCGGAGCAGCGCGAATAC---CTCTTTAACGCCATCGAGACCA 5013 Query 125353 TGCC-GTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 | || ||| | | | || ||| | |||| | || |||||| ||| | | Sbjct 5014 TCCCTGTCGTCAAGCAGAA-GGCCGAGTGGGCCTTGCGCTGGATCTCGGACAAGCGCGCC 5072 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 |||| | | || | ||||| || || |||||||| ||||||||||| || ||||| Sbjct 5073 TCGTTCTCGGAGCGCCTGGTCGCCTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCG 5132 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 ||||| ||||||||||||||||||||||||| |||||||| || ||| || | ||| Sbjct 5133 TTTGCCTCCATCTTTTGGCTCAAGAAGCGCGGTCTCATGCCTGGCCTGTCGTTCTCGAAC 5192 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAAC 125591 ||| | || || || |||||||| || ||| ||||||||| || |||| || | Sbjct 5193 GAGCTCATCTCGCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTCTTGTT---CAGC 5249 Query 125592 TATCTG-CGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGC 125650 | ||| | || | ||| | || | ||| | | ||| | ||||| || Sbjct 5250 CACCTGAAGAAGCGCGCGCA-------CCCCGACACGGTGAACCGCATCATCACCGAGGC 5302 Query 125651 CGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAA 125710 |||| || || || || ||| | ||||| |||| || ||| |||| |||||||| Sbjct 5303 CGTGGCCATTGAGCAGGACTTTTTGACCGACGCCCTGCCCGTCTCGCTGATCGGCATGAA 5362 Query 125711 CTGCAAG-CTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769 | || | || |||||| ||||||| ||||||||||| || || || ||| | | | Sbjct 5363 C-GCGCGCCTCATGTGCCAGTACATTGAGTTTGTGGCCGACCGCCTGCTGGTCAACCTCG 5421 Query 125770 TTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAG 125829 || |||| |||||| | ||| |||||||| || ||| | ||| || || Sbjct 5422 GCAACCCCAAGCACTACAACTCGGCGAACCCCTTTGACTTTATGGAGAACATTTCGCTCC 5481 Query 125830 AGGGTAAGACCAACTTTTTCGAG 125852 |||| ||| | |||||||||||| Sbjct 5482 AGGGCAAGTCGAACTTTTTCGAG 5504 >seq14 Length=25249 Score = 210 bits (232), Expect = 3e-49 Identities = 354/510 (69%), Gaps = 2/510 (0%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| |||| || |||||| ||||| Sbjct 6709 CAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTACCTGGAGCCGTGGCACTCGGAC 6768 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || || || ||||||||||| || || |||| || || | ||| Sbjct 6769 GTGTTCGAGTTCATTGATCTGCGCAAAAACCACGGTAAGGAGGAGGTGCGCGCGCGCGAC 6828 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||| || || ||| | || || ||||||||| |||||| | | ||| || Sbjct 6829 CTGTTCCTGGCGCTGTGGATTCCTGACTTGTTCATGCGCCGCGTCGAGCAGAACGGCGAC 6888 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||| || |||||||||| | || ||||| ||| |||| |||| |||||||| ||| Sbjct 6889 TGGTCGCTGATGTGCCCCGCCGAGTGCCCCGGCCTGGCCGACTGCTATGGCGAAGAATTT 6948 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGA 97175 || || ||| | ||||||| |||||||| | | | ||| | || | | Sbjct 6949 GATGCTCTCTACGAGAAATACGAGCGCGAGGGCCGCGCCAAGCGCTCTGTCAAGGCGC-A 7007 Query 97176 GAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTA 97234 ||| |||||| | ||||| | ||| ||| | ||||| || | || | | | || || Sbjct 7008 GAAGCTGTGGTATGCCATTCTCGAGGCACAGATCGAGACGGGCAACCCCTTCGTCCTGTA 7067 Query 97235 CAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAA 97294 |||||| | | ||| ||||| |||||||| || ||||||| |||||| |||| || Sbjct 7068 CAAGGACTCGGCGAACCGCAAGAGCAACCAGAAGAACCTGGGCACGATCAAGAGCTCGAA 7127 Query 97295 TCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGC 97354 ||||||||||| ||| | |||||| ||| |||||||||||||| || ||| ||||| Sbjct 7128 CCTGTGCACGGAGATTATCGAGTACAGCTCGCCGGACGAGACGGCTGTGTGCAACCTGGC 7187 Query 97355 ATCGGTCAATCTGCCCAAGTTTGTAGAGGG 97384 ||| | ||||| | ||| | ||||| Sbjct 7188 GTCGATTGCGCTGCCGACGTTCATCGAGGG 7217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057078718040